| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,375,536 – 11,375,599 |
| Length | 63 |
| Max. P | 0.767951 |
| Location | 11,375,536 – 11,375,599 |
|---|---|
| Length | 63 |
| Sequences | 5 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 90.10 |
| Shannon entropy | 0.16873 |
| G+C content | 0.56195 |
| Mean single sequence MFE | -22.12 |
| Consensus MFE | -17.28 |
| Energy contribution | -18.96 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.767951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11375536 63 + 23011544 AAGUGUGCCUAAUUGGGCGCCUCGGAAAAGAAAGUCGAUAGUUGGGCGGGCGGUGGAACCACC ..((.(((((((((((((...((......))..)))..)))))))))).))((((....)))) ( -23.10, z-score = -1.92, R) >droSim1.chr2L 11181674 63 + 22036055 AAGUGUGCCUAAUUGGGCGCCUCGGAAAGGAAAGUCGAAAGUUGGGCGGGCGGUGGAACCACC ..((.(((((((((.(((.(((.....)))...)))...))))))))).))((((....)))) ( -25.30, z-score = -2.46, R) >droSec1.super_3 6769995 63 + 7220098 AAGUGUGUCUAAUUGGGCGCCUUGGAAAGGAAAGUUGAUAGUUGGGCGGGCGGUGGAACCACC ..((.((((((((((.((.(((.....)))...))...)))))))))).))((((....)))) ( -21.50, z-score = -2.46, R) >droYak2.chr2L 7772399 58 + 22324452 AAGUGAGCCUAAUUGGGCGCCUUGGCA-GGAAAGUCGAUUGUUGGGC----GGUGGAACCACC ......((((((((.(((.(((....)-))...))).)..)))))))----((((....)))) ( -19.80, z-score = -1.22, R) >droEre2.scaffold_4929 12572838 59 - 26641161 AAGUGUGCCUAAUUGGGCGCCUUGGAAAGGAAAGUCGAUAGUUGGGC----GGUGGAACCACC ......((((((((((((.(((.....)))...)))..)))))))))----((((....)))) ( -20.90, z-score = -2.19, R) >consensus AAGUGUGCCUAAUUGGGCGCCUUGGAAAGGAAAGUCGAUAGUUGGGCGGGCGGUGGAACCACC ..((.(((((((((((((.(((.....)))...)))..)))))))))).))((((....)))) (-17.28 = -18.96 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:13 2011