| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,983,539 – 13,983,644 |
| Length | 105 |
| Max. P | 0.828395 |
| Location | 13,983,539 – 13,983,644 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 77.52 |
| Shannon entropy | 0.31161 |
| G+C content | 0.31183 |
| Mean single sequence MFE | -21.47 |
| Consensus MFE | -16.15 |
| Energy contribution | -16.27 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13983539 105 + 22422827 AAUGAAAUGAGGGAAUAUUCUUUGGGAGACUAUCACCAAGCUAUGUUCAUUCAAUGCCUUCAAUUGAGUUAUGAAUAGACUAUGCAAUUAUAUGAUGUCAAUUAA .......((((.((((((..(((((((.....)).)))))..)))))).))))........(((((((((((((((.(......).))).)))))).)))))).. ( -18.90, z-score = 0.26, R) >droSim1.chrX_random 3746659 90 + 5698898 AAUAAAAUGAGGGAAUAUUCCUUGGGAAACUAUCACCAAGUUAUGUUCAUUCAAUGCCUUCAAUAGAGUAAUGAAU-------AGACGUUCACUAAA-------- .......((((.((((((..(((((((.....)).)))))..))))))(((((.(((((.....)).))).)))))-------.....)))).....-------- ( -20.40, z-score = -2.18, R) >droSec1.super_20 603265 97 + 1148123 AAUAAAAUGAGGGAAUAUUCCUUGGGAAACUAUCACCAAGUUAUGUUCAUUCAAUGCCUUCAAUUGAGUAAUGAAUUCAUUAAAUGAGUUCACUAAA-------- ............((((((..(((((((.....)).)))))..))))))(((((((.......)))))))..(((((((((...))))))))).....-------- ( -25.10, z-score = -3.15, R) >consensus AAUAAAAUGAGGGAAUAUUCCUUGGGAAACUAUCACCAAGUUAUGUUCAUUCAAUGCCUUCAAUUGAGUAAUGAAU__A_UA_ACAAGUUCACUAAA________ ............((((((..(((((((.....)).)))))..))))))(((((.((((.......).))).)))))............................. (-16.15 = -16.27 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:42:01 2011