| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,976,906 – 13,976,999 |
| Length | 93 |
| Max. P | 0.744028 |
| Location | 13,976,906 – 13,976,999 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 57.27 |
| Shannon entropy | 0.72925 |
| G+C content | 0.53020 |
| Mean single sequence MFE | -30.12 |
| Consensus MFE | -13.91 |
| Energy contribution | -12.87 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.744028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13976906 93 + 22422827 -------------------GGCACGAUGCGAGAGCG-GGAGCUUAAAAUGCAAUCG---AAGUUUCACUCAAGCGUCGCAGCAGGCAGCGCAGUCGGCGUUGCAGCUCAAAGAGAA- -------------------(((.((((((..(((..-(((((((............---))))))).)))..))))))......(((((((.....))))))).))).........- ( -31.60, z-score = -0.73, R) >droSec1.super_20 596940 93 + 1148123 -------------------GGCACGUUGCGAGAGCG-GGAGCUUAAAAUGCAAUCG---AAGUUUCACUCAAGCGUCGCAGCAGGCAGCGCAGCCGGCGUUGCAGCUGAAAGAGAA- -------------------(((..(((((((..((.-(((((((............---)))))))......)).)))))))..(((((((.....))))))).))).........- ( -32.40, z-score = -0.25, R) >droYak2.chrX 8243330 93 + 21770863 -------------------GCUACGUUGCGAGCAUA-AGAGCUUCAAAUGCAAUCG---AAGUUUCACUCAGGCGUCGCAGCAGGCAGCGCAGCCGGCGUUGCAGCUCAAAGAGAA- -------------------(((..(((((((((...-.(((((((..........)---)))))).......)).)))))))..(((((((.....))))))))))..........- ( -32.70, z-score = -1.06, R) >droEre2.scaffold_4690 5807714 92 - 18748788 -------------------AGCACGUUGCGAGCGCG-AGAGUUUAAA-UGCAAUCG---CAGUCUCACUCAAGCGUCGCAGCGGGCAGCGCAGCCGGCGUUGCAGCUCGAAGAGAA- -------------------(((.((((((((.(((.-.((((.....-(((....)---)).....))))..))))))))))).(((((((.....))))))).))).........- ( -41.10, z-score = -2.13, R) >droAna3.scaffold_13047 1486111 72 + 1816235 -----------------------------------C-ACAAUUGCGA--GUCACGG---AAGUUACACUCAAGCGUCUCAGUUGGCGGCGCAGUCGGCGUUGCAGUCUCAAGA---- -----------------------------------.-.((((((.((--((.((..---..)).)).(......))).))))))(((((((.....)))))))..........---- ( -19.60, z-score = -0.00, R) >apiMel3.Group13 6854341 117 - 8929068 CAAUUUUAAAAAAUAUGGAUGUGGAUCAUGAAAUUGCAAAAUUAAUGGUUCAAUUGUCUCAAUCCCAAGAUGAUGAGAUUGGAGAUGGUACUACUGGUGUAGUUGUUUUAGCGGGUG .........((((((......((((((((..((((....)))).))))))))((..((((((((.((......)).)))).))))..))(((((....)))))))))))........ ( -23.30, z-score = -0.12, R) >consensus ___________________GGCACGUUGCGAGAGCG_AGAGCUUAAAAUGCAAUCG___AAGUUUCACUCAAGCGUCGCAGCAGGCAGCGCAGCCGGCGUUGCAGCUCAAAGAGAA_ ......................................(((((.............................((......))..(((((((.....))))))))))))......... (-13.91 = -12.87 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:59 2011