| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,970,961 – 13,971,069 |
| Length | 108 |
| Max. P | 0.870017 |
| Location | 13,970,961 – 13,971,069 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 72.81 |
| Shannon entropy | 0.38716 |
| G+C content | 0.30932 |
| Mean single sequence MFE | -21.60 |
| Consensus MFE | -14.20 |
| Energy contribution | -13.87 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13970961 108 + 22422827 UUUUCGGGUGUUUUAGCAGGUAUCUAACUGAAGGAAGGGAUUUAUAAAAAAAAAAUGUAGAAGGGUUAUGGAAACAAUUCCCUUUUAAAUAAAAUACCAUUUCGUAAU ......(((((((((.(((........)))...........................((((((((...((....))...))))))))..))))))))).......... ( -25.10, z-score = -2.33, R) >droSec1.super_20 590925 81 + 1148123 ------------------------UUUCUGAAGGAAAGGAUUCACAAAG--AAAAUGUAGAAGGGUUAUGGAAACAAUUCUCUUUUAAAUAGAAAACCCUUUCGUCU- ------------------------.....((..((((((.(((.....)--))....((((((((...((....))...))))))))..........)))))).)).- ( -18.40, z-score = -1.44, R) >droSim1.chrX 10738751 103 + 17042790 -UUUCUCGGGCUUAAGCAAAUAUCUAUCUGAAGGAAAGGAUUCAUAAA---AAAAUGUAGAAGGGUUAUGGAAACAAUUCUCUUUUAAAUAGAAUACCUUUUCGUCU- -......((((...........((.....)).(((((((((((((...---...)).((((((((...((....))...))))))))....)))).)))))))))))- ( -21.30, z-score = -1.42, R) >consensus _UUUC__G_G_UU_AGCA__UAUCUAUCUGAAGGAAAGGAUUCAUAAA___AAAAUGUAGAAGGGUUAUGGAAACAAUUCUCUUUUAAAUAGAAUACCAUUUCGUCU_ ................................((((.((((((..............((((((((...((....))...))))))))....)))).)).))))..... (-14.20 = -13.87 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:58 2011