| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,947,131 – 13,947,189 |
| Length | 58 |
| Max. P | 0.980807 |
| Location | 13,947,131 – 13,947,189 |
|---|---|
| Length | 58 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 69.49 |
| Shannon entropy | 0.42727 |
| G+C content | 0.52815 |
| Mean single sequence MFE | -21.00 |
| Consensus MFE | -15.21 |
| Energy contribution | -13.67 |
| Covariance contribution | -1.54 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.06 |
| SVM RNA-class probability | 0.980807 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13947131 58 + 22422827 UUGGGCGAUUUGAGUUGCAUCAAAGCUCUUUGGUGCAACCGAAAGCC-UAGGUACUGCA ((((((..((((.(((((((((((....))))))))))))))).)))-)))........ ( -25.10, z-score = -3.92, R) >droAna3.scaffold_13266 15926721 59 + 19884421 UCCGGCGAAUCGGAUGGCAUGAGAGCCUUUUUAUGCAACUGAAAGCCAUACAGACUGAA ...(((...((((...((((((((....))))))))..))))..)))............ ( -16.50, z-score = -2.13, R) >droEre2.scaffold_4845 21754332 59 + 22589142 UCGAGCGCUUCGUGUGGCAUCAGGGCUUUCUGGUGCAGCCGGAAGCCGUAGAGCCUGCA ....((((.....))(((.(((.(((((.((((.....))))))))).).))))).)). ( -21.40, z-score = 0.13, R) >consensus UCGGGCGAUUCGAGUGGCAUCAGAGCUUUUUGGUGCAACCGAAAGCC_UAGAGACUGCA ...(((...(((.((.((((((((....)))))))).)))))..)))............ (-15.21 = -13.67 + -1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:55 2011