Locus 14532

Sequence ID dm3.chrX
Location 13,934,113 – 13,934,182
Length 69
Max. P 0.834380
window20006

overview

Window 6

Location 13,934,113 – 13,934,182
Length 69
Sequences 5
Columns 69
Reading direction forward
Mean pairwise identity 71.88
Shannon entropy 0.50407
G+C content 0.45196
Mean single sequence MFE -17.24
Consensus MFE -11.16
Energy contribution -13.08
Covariance contribution 1.92
Combinations/Pair 1.19
Mean z-score -1.10
Structure conservation index 0.65
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.85
SVM RNA-class probability 0.834380
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 13934113 69 + 22422827
GUGUAACUUAUUUUUUUGGCAGAGCGUCUUGCCAACUUUGGUGAUUUCUGCCAAUUGUUGUUGGCGGGC
.......(((((...(((((((......)))))))....)))))..(((((((((....))))))))). ( -20.00, z-score =  -1.74, R)
>droEre2.scaffold_4690 5780133 68 - 18748788
GUGCAACUUAUUUUUU-GGCAGAGCGUCCUGCCAACUUGGGUGAUUUCUGCCGAUAGUUGUUGGCGGGC
..((.(((((....((-(((((......)))))))..))))).....((((((((....)))))))))) ( -23.70, z-score =  -1.90, R)
>droSec1.super_20 563626 69 + 1148123
GUGUAACGUAUUUUUUUGGCAGAGCGUCUUGCCAACUUUGGUGAUUUCUGCCGAUAGUUGUUGGCGGGC
((.(((((.(((...(((((((((.(((..((((....)))))))))))))))).)))))))))).... ( -19.60, z-score =  -1.25, R)
>droSim1.chrX 10717442 69 + 17042790
GUGUAACGUAUUUUUUUGGCAGAGCGUCUUGCCAACUUUGGUGAUUUCUGCCGAUAGUUGUUGGCGGGC
((.(((((.(((...(((((((((.(((..((((....)))))))))))))))).)))))))))).... ( -19.60, z-score =  -1.25, R)
>droPer1.super_0 10351868 56 - 11822988
------CUUUCAGUUUUUCCA----UUUCUGUUGUCUGACCAAAAUAUGAUCAAUUGUUGCUAUCG---
------....(((((..((.(----(((..(((....)))..))))..))..))))).........--- (  -3.30, z-score =   0.65, R)
>consensus
GUGUAACUUAUUUUUUUGGCAGAGCGUCUUGCCAACUUUGGUGAUUUCUGCCGAUAGUUGUUGGCGGGC
...............(((((((......)))))))...........(((((((((....))))))))). (-11.16 = -13.08 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:52 2011