| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,931,837 – 13,931,894 |
| Length | 57 |
| Max. P | 0.553224 |
| Location | 13,931,837 – 13,931,894 |
|---|---|
| Length | 57 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 53.80 |
| Shannon entropy | 0.77625 |
| G+C content | 0.61056 |
| Mean single sequence MFE | -17.86 |
| Consensus MFE | -6.90 |
| Energy contribution | -8.26 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.44 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553224 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13931837 57 + 22422827 ACAGGAGCAACAAACGUGUACGAUUACCGGCAGCGCUGCG---ACUGCGCUGCCCGCGUC------ ......((......((....))......((((((((....---...)))))))).))...------ ( -20.30, z-score = -0.69, R) >droSim1.chrX 10715069 57 + 17042790 ACAGGAGCAACAGACGUGUACGAUUACCGGCAGCGCUGCG---ACUGCGCUGCCCGUGUC------ ..............((....))..(((.((((((((....---...)))))))).)))..------ ( -19.60, z-score = -0.34, R) >droEre2.scaffold_4690 5776939 57 - 18748788 GGAGGAGCAACAGACGUGUACGAUUACCGGCAGCGCCGCG---ACUGCGCUGCCCGCGUC------ ............((((((...(.....)((((((((....---...))))))))))))))------ ( -21.40, z-score = -0.55, R) >droWil1.scaffold_181096 8530905 50 + 12416693 AAAGGAUGACCUGGCAGCGCAGUCCACCUGCAGUCGUCAG---UGUAUGUAGC------------- ........(((((((.((((((.....)))).)).)))))---.)).......------------- ( -13.50, z-score = -0.42, R) >anoGam1.chrU 35119156 66 + 59568033 ACCGCCACAAAAGUCCUCCAAGGUCAUCGUCGACCUUACUUGCAGUGCGCAAUCACUACCGACGAC ...(((((..((((.....((((((......))))))))))...))).))................ ( -14.50, z-score = -1.64, R) >consensus ACAGGAGCAACAGACGUGUACGAUUACCGGCAGCGCUGCG___ACUGCGCUGCCCGCGUC______ ............................((((((((.(......).))))))))............ ( -6.90 = -8.26 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:52 2011