| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,908,213 – 13,908,293 |
| Length | 80 |
| Max. P | 0.576318 |
| Location | 13,908,213 – 13,908,293 |
|---|---|
| Length | 80 |
| Sequences | 3 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 88.89 |
| Shannon entropy | 0.14922 |
| G+C content | 0.29854 |
| Mean single sequence MFE | -15.47 |
| Consensus MFE | -13.69 |
| Energy contribution | -14.47 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576318 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13908213 80 - 22422827 UGUCUGCGUUUCCAUACUAAAAAAAAAAUUACAGACACAUUUGGGAAAAUGUAAAUAUAUGUAUGUACAUAUGUGCAUGU .(((((.........................)))))((((((....)))))).........(((((((....))))))). ( -14.01, z-score = -0.60, R) >droSim1.chrX 10704417 74 - 17042790 UGUCUGGGUUUCCAU-----AAAAAAAAUCACAGACACAUUUGGAAAAAUGUAAAUG-AUGUAAGUACAUAUGUGCAUGU .((((((((((....-----.....))))).)))))((((((....)))))).....-......((((....)))).... ( -17.30, z-score = -2.13, R) >droSec1.super_20 541819 74 - 1148123 UGUCUGGGUUUCCAU-----AAAAAAAAUCACAGACACAUUUGGAAAAAUGUAAAUG-AUGUUUAUACAUAUGUGCAUGU .((((((((((....-----.....))))).)))))((((((....)))))).....-((((.(((....))).)))).. ( -15.10, z-score = -1.18, R) >consensus UGUCUGGGUUUCCAU_____AAAAAAAAUCACAGACACAUUUGGAAAAAUGUAAAUG_AUGUAUGUACAUAUGUGCAUGU .((((((((((..............))))).)))))((((((....))))))......((((((((....)))))))).. (-13.69 = -14.47 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:46 2011