| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,895,306 – 13,895,424 |
| Length | 118 |
| Max. P | 0.990915 |
| Location | 13,895,306 – 13,895,424 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 142 |
| Reading direction | reverse |
| Mean pairwise identity | 71.06 |
| Shannon entropy | 0.39917 |
| G+C content | 0.38953 |
| Mean single sequence MFE | -37.35 |
| Consensus MFE | -22.85 |
| Energy contribution | -25.63 |
| Covariance contribution | 2.79 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.45 |
| SVM RNA-class probability | 0.990915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13895306 118 - 22422827 UGAGCAAGGUUCCCCUCAUGGGCCACCAA--------UGAA----UAGUUGUGAUGCCUCACUGCUUUGACAUCAUUGUAAUGGGG----UUCGCAAAUAAGAAU------CAU-AUAUACACUAUUUAA-CUUCAUUUAUU ((((...(((..(((....)))..)))..--------((((----(((((((((.((((((.(((..((....))..))).)))))----)))))).........------...-......)))))))).-.))))...... ( -30.16, z-score = -1.72, R) >droPer1.super_156 52940 141 - 79571 UAAACGCGGUUCCCCCCAUGGGCCACCAAAAAUGUUGUGAAAUCCUCGAUACGAGAUUUCAUUG-UUGAGCAGAAAUGCUCUGGGGAAUCUUUGCGUUUAAUAAUGUACUACACGAUAUAGACAAUUCGAGAUUUAUUCAUU (((((((((((((((...(((....)))........((((((((.(((...)))))))))))..-..(((((....))))).))))))))...)))))))....(((.(((.......)))))).................. ( -41.10, z-score = -3.16, R) >dp4.Unknown_singleton_2077 6755 141 + 34350 UAAACGCGGUUCCCCUCAUGGGCCACCAAAAAUGUUGUGAAAUCCUCGAUACGAGAUUUCAAUG-UUGAGCAGAAAUGCUCUGGGGAAUCUUUGCGUUUAAUAAUGUACUACACGAUAUAGACAAUUCGAGAUUUAUUCAUU (((((((((((((((...(((....))).........(((((((.(((...))))))))))...-..(((((....))))).))))))))...)))))))....(((.(((.......)))))).................. ( -40.80, z-score = -3.13, R) >consensus UAAACGCGGUUCCCCUCAUGGGCCACCAAAAAUGUUGUGAAAUCCUCGAUACGAGAUUUCAAUG_UUGAGCAGAAAUGCUCUGGGGAAUCUUUGCGUUUAAUAAUGUACUACACGAUAUAGACAAUUCGAGAUUUAUUCAUU (((((((((((((((...(((....))).........(((((((.(((...))))))))))......(((((....))))).))))))...))))))))).......................................... (-22.85 = -25.63 + 2.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:46 2011