| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,885,713 – 13,885,854 |
| Length | 141 |
| Max. P | 0.650314 |
| Location | 13,885,713 – 13,885,854 |
|---|---|
| Length | 141 |
| Sequences | 4 |
| Columns | 142 |
| Reading direction | forward |
| Mean pairwise identity | 62.92 |
| Shannon entropy | 0.57498 |
| G+C content | 0.46723 |
| Mean single sequence MFE | -24.29 |
| Consensus MFE | -10.51 |
| Energy contribution | -11.38 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13885713 141 + 22422827 AGCAUAGUGAUCUUUGCUGUUUUUAGGACCCCUAAAAUAAACCCUUUUUCACUGCAACCCCCCGCAAUGAUCUUACUUUUGGCUGCCC-AACAGCUAUGUACAUAAAUAUACAUAUGUAUAAAUUUCGCCGAAAUCUGCUAG ((((....((((.((((...(((((((...)))))))................(........))))).))))....(((((((.((..-....))..((((((((........))))))))......)))))))..)))).. ( -27.70, z-score = -2.49, R) >droSec1.super_20 526849 125 + 1148123 AGCAUUGUGAUCUUUGCUGGUUGUAGGACCCCUAUAAUAAACCCUUUUUCACUGCAACCCUC---AAUGAUCUUUCUUCUGGCUGCCCCAACAGCUACGUA--------------UGCAUAAAAUUCGCCGAAAUCAGCUAG .(((((((((((.(((..((((((((.........................))))))))..)---)).))))........(((((......)))))))).)--------------))).........((.(....).))... ( -29.01, z-score = -2.41, R) >droSim1.chrX 10688622 125 + 17042790 AGCAUUGUGAUCUUUGCUGCUUGUAGGACCCCUAUAAUAAACCCUUUUUCACUGCAACCCUC---GAUGAUCUUUCUUUUGGCUGCCCCAACAGCUACGUA--------------UGUAUAAAAUUGGCCGAAAUCAGCUAG .(((((((((((.(((..(.((((((.........................)))))).)..)---)).))))........(((((......)))))))).)--------------))).......((((.(....).)))). ( -21.91, z-score = 0.08, R) >droVir3.scaffold_12970 10145070 117 - 11907090 -AGAUCGUGUGCCUUCAGUACGACAGGUACGCACUGCUAAACCAC---GCACCUCACCCCUC-----UCGCCGUCCUACU--UAGCUUAAGCCAGUGCAUG--------------CUUACAACCCCCCCCCCCCCCCCCUCG -.....((((((((((.....)).))))))))...(((((...((---((............-----..).))).....)--)))).(((((........)--------------))))....................... ( -18.54, z-score = -0.72, R) >consensus AGCAUUGUGAUCUUUGCUGAUUGUAGGACCCCUAUAAUAAACCCUUUUUCACUGCAACCCUC___AAUGAUCUUUCUUCUGGCUGCCCCAACAGCUACGUA______________UGUAUAAAAUUCGCCGAAAUCAGCUAG (((...((((.........(((((((.....)))))))..........))))...........................((((((......))))))........................................))).. (-10.51 = -11.38 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:43 2011