| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,872,396 – 13,872,491 |
| Length | 95 |
| Max. P | 0.678282 |
| Location | 13,872,396 – 13,872,491 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 74.59 |
| Shannon entropy | 0.34659 |
| G+C content | 0.47220 |
| Mean single sequence MFE | -14.12 |
| Consensus MFE | -9.05 |
| Energy contribution | -8.83 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.678282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13872396 95 - 22422827 ----------UACACACGUCAACUGCAUUCCAGACUUUGGAAUCCACUUGAAACAUAACCGAAAUCUGAUUGACCCCUCCCAUUCACUGGCACCACCCACUUUCA ----------........((((.((.(((((((...))))))).)).)))).........((((..(((.((........)).))).(((......))).)))). ( -13.40, z-score = -1.52, R) >droEre2.scaffold_4690 5731763 87 + 18748788 ----------UACGCCCGUCAACUGCAUUCCAGACUUUGGAAUCCACUUGAAACAUAACCGAAAUCUGAGUG--CCCCCCCAUU------UGCCACCCACUUUCA ----------...((.........((((((.(((.(((((..................))))).))))))))--).........------.))............ ( -12.68, z-score = -1.43, R) >droYak2.chrX 8166430 98 - 21770863 UUUCAACUGUGACGUCCGUCAACUGCAUUCCAGACUUUGGAAUCUACUUGAAACAUAACCGAAAUCUGAAUG---CCCCGCAUUUACCACCACCACCACCA---- .........((((....))))...((((((.(((.(((((..................))))).))))))))---).........................---- ( -16.27, z-score = -2.10, R) >consensus __________UACGCCCGUCAACUGCAUUCCAGACUUUGGAAUCCACUUGAAACAUAACCGAAAUCUGAAUG__CCCCCCCAUU_AC___CACCACCCACUUUCA ..................((((.((.(((((((...))))))).)).))))...................................................... ( -9.05 = -8.83 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:41 2011