| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,867,866 – 13,867,958 |
| Length | 92 |
| Max. P | 0.593335 |
| Location | 13,867,866 – 13,867,958 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 90.40 |
| Shannon entropy | 0.17378 |
| G+C content | 0.46755 |
| Mean single sequence MFE | -27.26 |
| Consensus MFE | -22.50 |
| Energy contribution | -23.22 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13867866 92 - 22422827 UCACCCCACUGG-CUUUGUGUGUGUGUGUAUUCCACAUAUCGAUUGCAUUUGGGUAAAUGCCCAAGUGGCAAACCAAACACGAGACGUCAAAG .........(((-(((((((((((((((.....)))))))...((((((((((((....)))))))).)))).....)))))))..))))... ( -28.60, z-score = -2.03, R) >droSim1.chrX 10671849 93 - 17042790 UCACCACACUGGUUUUUGUGUGUGUGUGUGUUCCACAUAUCGAUUGCAUUUGGGUAAAUGCCCAAGUGGCAAACCAAACACGAGACGUCAAAG ..(((.....)))(((((((((((((((.....)))))))...((((((((((((....)))))))).)))).....))))))))........ ( -28.50, z-score = -1.36, R) >droSec1.super_20 509785 93 - 1148123 UCACCACACUGGUUUUUGUGUAUGUGUGUGUUCCACAUAUCGAUUGCAUUUGGGUAAAUGCCCAAGUGGCAAACCAAACACGAGACGUCAAAG ..(((.....)))(((((((((((((((.....)))))))...((((((((((((....)))))))).)))).....))))))))........ ( -28.20, z-score = -1.69, R) >droYak2.chrX 8161250 91 - 21770863 UCACCCCUCUGG--UUUCUGUGUGUGUGUGUUCCACAUAUCGAUUGCAUUUGGGUAAAUGCCCAAGUGGCAAACCAAACACGAGACGUCGAUG ...........(--((((.(((((((((((...)))))))...((((((((((((....)))))))).)))).....)))))))))....... ( -27.80, z-score = -1.78, R) >droEre2.scaffold_4690 5727354 89 + 18748788 ---CCACGCCCC-UCCGGUUUUUGUGUGUGUUCCACAUAUCGAUUGCAUUUGGGUAAAUGCCCAAGUGGCAAACCAAACACGAGACGUCAAAG ---..(((...(-(((((((..((((((.....))))))..)))))(((((((((....))))))))).............))).)))..... ( -23.20, z-score = -0.95, R) >consensus UCACCACACUGG_UUUUGUGUGUGUGUGUGUUCCACAUAUCGAUUGCAUUUGGGUAAAUGCCCAAGUGGCAAACCAAACACGAGACGUCAAAG ..............((((((((((((((.....)))))))...((((((((((((....)))))))).)))).....)))))))......... (-22.50 = -23.22 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:38 2011