| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,842,175 – 13,842,266 |
| Length | 91 |
| Max. P | 0.734823 |
| Location | 13,842,175 – 13,842,266 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 71.78 |
| Shannon entropy | 0.54598 |
| G+C content | 0.47288 |
| Mean single sequence MFE | -25.72 |
| Consensus MFE | -10.19 |
| Energy contribution | -10.82 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13842175 91 + 22422827 ---------------CGCUGGUCGUCGUGAUG-ACGAUGAUGAUGAUGUUGCCACCAGUGGCGUUAAUAAAGUCAUCUAGCGGUAAACACUUCCCAACAAAACCGAG ---------------(((((((((((.....)-)))))((((((.((..(((((....)))))...))...)))))))))))......................... ( -26.90, z-score = -2.01, R) >droSim1.chrX 10652895 91 + 17042790 ---------------CGCUGGUCGUCGUGAUG-ACGAUGAUGAUGAUGUUGCCACCAGUGGCGUUAAUAAAGUCAUCUAGCGGUAAACACUUCCCAGCAAAACCGAG ---------------.((((((((((.....)-)))).((((((.((..(((((....)))))...))...))))))................)))))......... ( -28.40, z-score = -2.21, R) >droSec1.super_20 484887 91 + 1148123 ---------------CGCUGGUCGUCGUGAUG-ACGAUGAUGAUGAUGUUGCCACCAGUGGCGUUAAUAAAGUCAUCUAGCGGUAAACACUUCCCAGCAAAACCGAG ---------------.((((((((((.....)-)))).((((((.((..(((((....)))))...))...))))))................)))))......... ( -28.40, z-score = -2.21, R) >droYak2.chrX 8133968 91 + 21770863 ---------------CGCUGGUCGUCGUGAUG-ACGAUGAUGAUGAUGUUGCCACCAGUGGCGUUAAUAAAGUCAUCUAGCGGUAAACACUGCCCAGCAAAACCCAC ---------------.((((((((((.....)-)))).((((((.((..(((((....)))))...))...))))))..(((((....))))))))))......... ( -32.80, z-score = -3.39, R) >droEre2.scaffold_4690 5701376 91 - 18748788 ---------------CGCUGGUCGUCGUGAUG-ACGAUGAUGAUGAUGUUGCCACCAGUGGCGUUAAUAAAGUCAUCUAGCGGUAAACACUUCCCAGCAAAACCGAG ---------------.((((((((((.....)-)))).((((((.((..(((((....)))))...))...))))))................)))))......... ( -28.40, z-score = -2.21, R) >dp4.chrXL_group1e 6133838 107 - 12523060 CCCCGAUCAUCAUGAUGAUGCCGCUGCUGCUGCAUGAUGAUGAUGAUGUUGCCACCAGUGGCGUUAAUAAAGUCAUCUAGCGGUAAACACUAAUCAACAAAAUUGAG .....((((((((.((.((((.((....)).)))).)).)))))))).(((((.(.((((((.........)))).)).).))))).......((((.....)))). ( -31.20, z-score = -2.40, R) >droWil1.scaffold_181096 3992096 87 - 12416693 --------------------CUCUUGGACGUCUGUGAGCACUAAGUUGACACCAAGUGUGGCAUUAAUAAAGCCAUCUAGCGGUAAACACUUGACAACAAAUCAUCA --------------------(((.(((....))).)))......((((....((((((((((.........)))(((....)))..))))))).))))......... ( -16.10, z-score = 0.54, R) >droMoj3.scaffold_6359 1498758 71 - 4525533 -----------------------------------GACGAC-ACACUGUCGGCGAUUGCCGUCUUAAUAAAGUCAUCUAGCGGUUAAUAUUAUACAACAAGGCGCAA -----------------------------------((((((-.....)))(((....)))...........))).....(((.((..............)).))).. ( -13.54, z-score = -0.31, R) >consensus _______________CGCUGGUCGUCGUGAUG_ACGAUGAUGAUGAUGUUGCCACCAGUGGCGUUAAUAAAGUCAUCUAGCGGUAAACACUUCCCAACAAAACCGAG ...................................((((((........(((((....)))))........)))))).............................. (-10.19 = -10.82 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:36 2011