| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,815,834 – 13,815,903 |
| Length | 69 |
| Max. P | 0.989590 |
| Location | 13,815,834 – 13,815,903 |
|---|---|
| Length | 69 |
| Sequences | 5 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 80.29 |
| Shannon entropy | 0.35686 |
| G+C content | 0.42093 |
| Mean single sequence MFE | -18.16 |
| Consensus MFE | -11.57 |
| Energy contribution | -11.32 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.989590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13815834 69 + 22422827 UAACCUCUUGCAAAUUGCUUUGAUUAAGCUGUGAGAGCUCAACUGAAUAAGUGAGUGACUGACUCACUG ....((((..((....((((.....))))))..))))............(((((((.....))))))). ( -19.50, z-score = -3.17, R) >droSim1.chrX 10629534 69 + 17042790 UAACCUCUUGCAAAUUGCUUUGAUUAAGCUGUGCGAGCUCAAUUGAAUAAGUGAGUGACUGACUCACUG ......((((((....((((.....))))..))))))............(((((((.....))))))). ( -19.20, z-score = -3.08, R) >droSec1.super_20 461972 69 + 1148123 UAACCUCUUGCAAAUUGCUUUGAUUAAGCUGUGCGAGCUCAACUGAAUAAGUGAGUGACUGACUCACUG ......((((((....((((.....))))..))))))............(((((((.....))))))). ( -19.20, z-score = -3.09, R) >droEre2.scaffold_4690 5677703 69 - 18748788 UAACCUCUUGCAAAUUGCUUUGAUUAAGCUGUGAGAGCUCAACUGAAUAAGUGAGUGACUGACUCACUA ....((((..((....((((.....))))))..))))............(((((((.....))))))). ( -19.50, z-score = -3.13, R) >droAna3.scaffold_13047 1343280 54 + 1816235 --------UGCCACUGGCUUUGAUUAAGCCGUG-------GACUAAGUGACCAAGUGACGGAUUUGUUG --------..((((.(((((.....))))))))-------).....((.((...)).)).......... ( -13.40, z-score = -1.25, R) >consensus UAACCUCUUGCAAAUUGCUUUGAUUAAGCUGUGAGAGCUCAACUGAAUAAGUGAGUGACUGACUCACUG ....(((.((((....((((.....)))))))).)))............(((((((.....))))))). (-11.57 = -11.32 + -0.25)
| Location | 13,815,834 – 13,815,903 |
|---|---|
| Length | 69 |
| Sequences | 5 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 80.29 |
| Shannon entropy | 0.35686 |
| G+C content | 0.42093 |
| Mean single sequence MFE | -16.42 |
| Consensus MFE | -10.88 |
| Energy contribution | -11.36 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.922244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13815834 69 - 22422827 CAGUGAGUCAGUCACUCACUUAUUCAGUUGAGCUCUCACAGCUUAAUCAAAGCAAUUUGCAAGAGGUUA .(((((((.....)))))))..(((.((((((((.....))))))))....((.....))..))).... ( -16.50, z-score = -1.59, R) >droSim1.chrX 10629534 69 - 17042790 CAGUGAGUCAGUCACUCACUUAUUCAAUUGAGCUCGCACAGCUUAAUCAAAGCAAUUUGCAAGAGGUUA .(((((((.....)))))))..(((.((((((((.....))))))))....((.....))..))).... ( -16.20, z-score = -1.66, R) >droSec1.super_20 461972 69 - 1148123 CAGUGAGUCAGUCACUCACUUAUUCAGUUGAGCUCGCACAGCUUAAUCAAAGCAAUUUGCAAGAGGUUA .(((((((.....)))))))..(((.((((((((.....))))))))....((.....))..))).... ( -16.50, z-score = -1.42, R) >droEre2.scaffold_4690 5677703 69 + 18748788 UAGUGAGUCAGUCACUCACUUAUUCAGUUGAGCUCUCACAGCUUAAUCAAAGCAAUUUGCAAGAGGUUA .(((((((.....)))))))..(((.((((((((.....))))))))....((.....))..))).... ( -16.40, z-score = -1.58, R) >droAna3.scaffold_13047 1343280 54 - 1816235 CAACAAAUCCGUCACUUGGUCACUUAGUC-------CACGGCUUAAUCAAAGCCAGUGGCA-------- ..........(((((((((.(.....).)-------)).(((((.....))))))))))).-------- ( -16.50, z-score = -3.95, R) >consensus CAGUGAGUCAGUCACUCACUUAUUCAGUUGAGCUCGCACAGCUUAAUCAAAGCAAUUUGCAAGAGGUUA .(((((((.....)))))))......((((((((.....))))))))....(((...)))......... (-10.88 = -11.36 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:33 2011