| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,808,018 – 13,808,117 |
| Length | 99 |
| Max. P | 0.862214 |
| Location | 13,808,018 – 13,808,117 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 78.96 |
| Shannon entropy | 0.41047 |
| G+C content | 0.43440 |
| Mean single sequence MFE | -26.33 |
| Consensus MFE | -14.91 |
| Energy contribution | -18.24 |
| Covariance contribution | 3.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13808018 99 - 22422827 CCCUAGUUUCAGUCGACCAGCAAUUGAAAUGUCCCAGUGUUCAGUGGAAAAUGUUUCGGUUUUUUGGCCAGGUAUGGCCUGAUCUUAAUUUCCAUUGAA .....((((((((.(.....).)))))))).........(((((((((((.((....((((....(((((....))))).)))).)).))))))))))) ( -26.70, z-score = -1.86, R) >droAna3.scaffold_13047 1335318 79 - 1816235 CCUCGGCCU---UCCGCCGGCAAUUGAAAUGUCCCAG--------------UGUCUCUGCU---GGGCUGGAGGCCUCCAGAUCUUAAUUUUUAUUCAA ....(((((---((.(((((((.......)))).(((--------------(......)))---)))).)))))))....................... ( -25.00, z-score = -1.70, R) >droEre2.scaffold_4690 5669810 97 + 18748788 CCUUAGUUUUAGUUGGCCAGCGAUUGAAAUGUCCCAGUGCUCAGUGGAAAAUGUUUCGGUUUU-UGACCAGUUAUGGCCUGAUUUUAAUUUCCAUGGA- ((..((((..(((((((((..(((((((((((.(((.(....).)))...)))))))((((..-.)))))))).))))).))))..)))).....)).- ( -22.30, z-score = -0.49, R) >droYak2.chrX 8101713 99 - 21770863 CCUUCGUUUUAGUUGGCCAGCAAUUGAAAUGUCCCAGAGCUCAGAGGAAAAUGUUUCGGUUUUCUGGCCAGUUAUGGCCUGAUCUUAAUUUCCAUUGAA ....(((((((((((.....))))))))))).........((((.(((((.((....((((....(((((....))))).)))).)).))))).)))). ( -25.50, z-score = -0.96, R) >droSec1.super_20 454437 98 - 1148123 CCCUAGUUUCAGUUGACCAGCAAUUGAAAUGUCCCAGCGUUCAGUGGAAAAUAUUUC-GUUUUUUGGCCAGGUAUGGCCUGAUCUUAAUUUCCAUUGAA .....((((((((((.....)))))))))).........(((((((((((.((..((-(......(((((....))))))))...)).))))))))))) ( -29.40, z-score = -3.38, R) >droSim1.chrX 10621876 98 - 17042790 CCCUAGUUUCAGUUGACCAGCAAUUGAAAUGUCCCAGCGUUCAGUGGAAAAUGUUUC-GUUUUUUGGCCAGGUAUGGCCUGAUCUUAAUUUCCAUUGAA .....((((((((((.....)))))))))).........(((((((((((.((..((-(......(((((....))))))))...)).))))))))))) ( -29.10, z-score = -3.06, R) >consensus CCCUAGUUUCAGUUGACCAGCAAUUGAAAUGUCCCAGCGUUCAGUGGAAAAUGUUUCGGUUUUUUGGCCAGGUAUGGCCUGAUCUUAAUUUCCAUUGAA .....((((((((((.....))))))))))..........((((((((((.((..(((.......(((((....))))))))...)).)))))))))). (-14.91 = -18.24 + 3.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:31 2011