| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,801,316 – 13,801,376 |
| Length | 60 |
| Max. P | 0.989621 |
| Location | 13,801,316 – 13,801,376 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 88.60 |
| Shannon entropy | 0.18920 |
| G+C content | 0.44170 |
| Mean single sequence MFE | -18.90 |
| Consensus MFE | -15.80 |
| Energy contribution | -15.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.21 |
| SVM RNA-class probability | 0.985622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13801316 60 + 22422827 GUUAAAGUUAGCCAAACGAGUCGCUUUUUAUGGGAGACCUCGUGUGGCAAGCGAAUAUUU----- ......(((.((((.(((((((.(((.....))).)).))))).)))).)))........----- ( -18.80, z-score = -2.79, R) >droEre2.scaffold_4690 5662834 64 - 18748788 GUUGAAGUUAGCCAAACGAGUCGCUUAUUAUGG-CGGCCUCGUGUGGCAUACGAAUAUAGCAUUU ((((..((..((((.((((((((((......))-))).))))).))))..)).....)))).... ( -22.20, z-score = -2.93, R) >droYak2.chrX 8094258 59 + 21770863 GUUGAAGUUAGCCAAACGAGUCGCUUAUUAUGG-AGAACUCGUGUGGCAUACGAAUAUUU----- ..........((((.(((((((.((......))-.).)))))).))))............----- ( -16.50, z-score = -2.52, R) >droSec1.super_20 447688 59 + 1148123 GUGGAAGUUAGCCAAACGAGUCGCUUAUUAUGG-AGACCUCGUGUGGCAAGCGAAUAUUU----- ......(((.((((.(((((((.((......))-.)).))))).)))).)))........----- ( -18.50, z-score = -2.64, R) >droSim1.chrX 10615102 59 + 17042790 GUGGAAGUUAGCCAAACGAGUCGCUUAUUAUGG-AGACCUCGUGUGGCAAGCGAAUAUUU----- ......(((.((((.(((((((.((......))-.)).))))).)))).)))........----- ( -18.50, z-score = -2.64, R) >consensus GUUGAAGUUAGCCAAACGAGUCGCUUAUUAUGG_AGACCUCGUGUGGCAAGCGAAUAUUU_____ ......(((.((((.(((((((.............)).))))).)))).)))............. (-15.80 = -15.80 + -0.00)
| Location | 13,801,316 – 13,801,376 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 88.60 |
| Shannon entropy | 0.18920 |
| G+C content | 0.44170 |
| Mean single sequence MFE | -14.84 |
| Consensus MFE | -12.57 |
| Energy contribution | -12.57 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.80 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.989621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13801316 60 - 22422827 -----AAAUAUUCGCUUGCCACACGAGGUCUCCCAUAAAAAGCGACUCGUUUGGCUAACUUUAAC -----............((((.(((((.((.............))))))).)))).......... ( -12.82, z-score = -2.03, R) >droEre2.scaffold_4690 5662834 64 + 18748788 AAAUGCUAUAUUCGUAUGCCACACGAGGCCG-CCAUAAUAAGCGACUCGUUUGGCUAACUUCAAC ..((((.......))))((((.(((((..((-(........))).))))).)))).......... ( -18.60, z-score = -3.07, R) >droYak2.chrX 8094258 59 - 21770863 -----AAAUAUUCGUAUGCCACACGAGUUCU-CCAUAAUAAGCGACUCGUUUGGCUAACUUCAAC -----........((..((((.(((((((((-........)).))))))).))))..))...... ( -15.60, z-score = -3.99, R) >droSec1.super_20 447688 59 - 1148123 -----AAAUAUUCGCUUGCCACACGAGGUCU-CCAUAAUAAGCGACUCGUUUGGCUAACUUCCAC -----............((((.(((((.((.-(........).))))))).)))).......... ( -13.60, z-score = -2.45, R) >droSim1.chrX 10615102 59 - 17042790 -----AAAUAUUCGCUUGCCACACGAGGUCU-CCAUAAUAAGCGACUCGUUUGGCUAACUUCCAC -----............((((.(((((.((.-(........).))))))).)))).......... ( -13.60, z-score = -2.45, R) >consensus _____AAAUAUUCGCUUGCCACACGAGGUCU_CCAUAAUAAGCGACUCGUUUGGCUAACUUCAAC .................((((.(((((..................))))).)))).......... (-12.57 = -12.57 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:30 2011