| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,351,595 – 11,351,647 |
| Length | 52 |
| Max. P | 0.966897 |
| Location | 11,351,595 – 11,351,647 |
|---|---|
| Length | 52 |
| Sequences | 4 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 94.82 |
| Shannon entropy | 0.08164 |
| G+C content | 0.28446 |
| Mean single sequence MFE | -7.96 |
| Consensus MFE | -7.23 |
| Energy contribution | -7.04 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.966897 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11351595 52 - 23011544 ACUCAAUUUUAUAUGCAUAAGUGAAAUUACCUACUCUCAUAUAUGCAAAUAC .........(((.((((((.((((............)))).)))))).))). ( -8.90, z-score = -3.40, R) >droEre2.scaffold_4929 12548878 50 + 26641161 ACUCAAUGUUAUAUGCAUAAGUGAAA-UACCUACUC-CAUAUAUGCAAAUAG .........(((.((((((.(((...-.........-))).)))))).))). ( -7.80, z-score = -1.84, R) >droYak2.chr2L 7747427 51 - 22324452 ACUCAAUUUUAUAUGCAUAAGUGAAAUUACCUACUC-CAUAUAUGCAAAUAG .........(((.((((((.(((.............-))).)))))).))). ( -7.72, z-score = -2.51, R) >droSec1.super_3 6746192 51 - 7220098 ACUCAAUUUUAUAUGCAUAAGUGAAAUUACCUACUC-CAUAUGUGCAAAUAC .........(((.((((((.(((.............-))).)))))).))). ( -7.42, z-score = -1.84, R) >consensus ACUCAAUUUUAUAUGCAUAAGUGAAAUUACCUACUC_CAUAUAUGCAAAUAC .........(((.((((((.(((..............))).)))))).))). ( -7.23 = -7.04 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:11 2011