| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,790,068 – 13,790,160 |
| Length | 92 |
| Max. P | 0.732528 |
| Location | 13,790,068 – 13,790,160 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 73.35 |
| Shannon entropy | 0.48833 |
| G+C content | 0.49846 |
| Mean single sequence MFE | -25.50 |
| Consensus MFE | -13.67 |
| Energy contribution | -16.12 |
| Covariance contribution | 2.45 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.732528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13790068 92 - 22422827 ----CCCUUCAAUAUGCCCAUCGUGUUGCACAUUGGCAACUGAAAAUUGUCUUGCGGUUUUCACUUGGCCAACGUGGCGUAUGCGUAAUGU--GUCGA ----.....(((((((.....)))))))(((((((((((((((((((((.....)))))))))....(((.....))))).))).))))))--).... ( -25.60, z-score = -0.65, R) >droSim1.chrX 10604594 77 - 17042790 -------------------AUCGUGUUGCACAUUGCCGACUGAAAAUUGUCUUGCGGUUUUCACUUGGCCAACGUGGCGUAUGCGUAAUGU--GUCGA -------------------.(((....((((((((((((.(((((((((.....))))))))).)))(((.....)))......)))))))--))))) ( -25.70, z-score = -1.75, R) >droSec1.super_20 436227 77 - 1148123 -------------------AUCGUGUUGCACAUUGCCAACUGAAAAUUGUCUUGCGGUUUUCACUUGGCCAACGUGGCGUAUGCGUAAUGU--GUCGA -------------------.(((....((((((((((((.(((((((((.....))))))))).)))(((.....)))......)))))))--))))) ( -26.00, z-score = -2.09, R) >droYak2.chrX 8083206 91 - 21770863 -----CCUCCCGCUAUGCCAUCGUGUUGCACAUUGCCAACUGAAAAUUGUCUUGCGGUUUUCACUUGGCCAACGUGGCGUAUGCGUAAUGU--GUCGA -----.....(((((((((((...((((......(((((.(((((((((.....))))))))).))))))))))))))))).)))......--..... ( -31.50, z-score = -2.87, R) >droEre2.scaffold_4690 5652243 96 + 18748788 CCCUCCGCUGCUCCCCGCCUUCGUGUUGCACAUUGCCAACGGAAAAUUGUCUUGCGGUUUUCACUUGGCCAACGUGGCGUAUGCGUAAUGU--GUCGA ..(..((((((....((((....(((((......(((((..((((((((.....))))))))..)))))))))).))))...)))....))--)..). ( -24.80, z-score = 0.31, R) >droAna3.scaffold_13047 1313798 73 - 1816235 ----------------------AUUUUCCAUUUUCCGCUCUCCACUUGGCCACUUGG---CCAUUUGGCCAACACGGCGUAUGCGUAAUGCUGUUCGA ----------------------......((((...(((....((..(((((....))---)))..))(((.....)))....))).))))........ ( -19.40, z-score = -1.44, R) >consensus ___________________AUCGUGUUGCACAUUGCCAACUGAAAAUUGUCUUGCGGUUUUCACUUGGCCAACGUGGCGUAUGCGUAAUGU__GUCGA ....................(((......((((((((((.(((((((((.....))))))))).)))(((.....)))......)))))))....))) (-13.67 = -16.12 + 2.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:28 2011