| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,783,558 – 13,783,624 |
| Length | 66 |
| Max. P | 0.510643 |
| Location | 13,783,558 – 13,783,624 |
|---|---|
| Length | 66 |
| Sequences | 6 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 79.31 |
| Shannon entropy | 0.38740 |
| G+C content | 0.44947 |
| Mean single sequence MFE | -12.53 |
| Consensus MFE | -9.60 |
| Energy contribution | -10.32 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13783558 66 - 22422827 -GAAAUGGCAAUAGCAACAACCACAACUAAGCUUUAAAAGCUGCGUUGCGUGUGCCCCUCUCUCUCU -.....((((...(((((...........((((.....))))..)))))...))))........... ( -14.62, z-score = -1.63, R) >droSim1.chrX 10597888 65 - 17042790 GGAAAUGGCAAUAGCAACAACCACAACUAAGCUUUGAAAGCUGCGUUGCGUGUGCCCCUCUCUCU-- (((...((((...(((((...........((((.....))))..)))))...))))..)))....-- ( -14.92, z-score = -0.59, R) >droSec1.super_20 429923 67 - 1148123 GGAAAUGGCAAUAGCAACAACCACAACUAAGCUUUAAAAGCUGCGUUGCGUGUGCCCCUCUCUCUCU (((...((((...(((((...........((((.....))))..)))))...))))..)))...... ( -14.92, z-score = -1.08, R) >droYak2.chrX 8076329 62 - 21770863 -GAAAUGGCAAUAGCAACAACCACAACUAAGCUUUGAAAGCUGCGUUGCGUGUGCCCCUCUCU---- -.....((((...(((((...........((((.....))))..)))))...)))).......---- ( -14.62, z-score = -1.12, R) >droEre2.scaffold_4690 5645830 66 + 18748788 -GAAACGGCAAUAGCAACAACCACAACUAAGCUUUGAAAGCUGCGUUGCGUGUGCCCCUCUCUUACU -.....((((...(((((...........((((.....))))..)))))...))))........... ( -14.92, z-score = -1.11, R) >droMoj3.scaffold_6540 25157675 52 + 34148556 -GAAACAGCAGCAACAACAACAAUAACAAAUAUCAACAAACUACUUUGUAUUU-------------- -..................................(((((....)))))....-------------- ( -1.20, z-score = 0.32, R) >consensus _GAAAUGGCAAUAGCAACAACCACAACUAAGCUUUAAAAGCUGCGUUGCGUGUGCCCCUCUCUCU__ ......((((...(((((...........((((.....))))..)))))...))))........... ( -9.60 = -10.32 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:28 2011