| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,746,827 – 13,746,917 |
| Length | 90 |
| Max. P | 0.781862 |
| Location | 13,746,827 – 13,746,917 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 98.22 |
| Shannon entropy | 0.02960 |
| G+C content | 0.51111 |
| Mean single sequence MFE | -27.72 |
| Consensus MFE | -27.28 |
| Energy contribution | -27.04 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781862 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13746827 90 - 22422827 CCAUGGCAAGCAAUAGAGAAAUUGGACGGUGCUGGCAAUCCUGCAGCUGCUGCAUCGUCCAUCCGCUGGAAACGAAAUGUGCAAUUAAAC .....((((((....((....))(((((((((.((((..........)))))))))))))....)))(....)......)))........ ( -26.90, z-score = -1.06, R) >droSim1.chrX 10560981 90 - 17042790 CCAUGGCAAGCAAUAGAGAAAUUGGACGGUGCUGGCAAUCCUGCAGCUGCCGCAUCGUCCAUCCGCUGGAAACGAAAUGUGCAAUUAAAC .....((((((....((....))(((((((((.((((..........)))))))))))))....)))(....)......)))........ ( -29.10, z-score = -1.73, R) >droSec1.super_20 394185 90 - 1148123 CCAUGGCAAGCAAUAGAGAAAUUGGACGGUGCUGGCAAUCCUGCAGCUGCCGCAUCGUCCAUCCGCUGGAAACGAAAUGUGCAAUUAAAC .....((((((....((....))(((((((((.((((..........)))))))))))))....)))(....)......)))........ ( -29.10, z-score = -1.73, R) >droYak2.chrX 8039138 90 - 21770863 CCAUGGCAAGCAAUAGAGAAACUGGACGGUGCUGGCAACCCUGCAGCUGCUGCAUCGUCCAUCCGCUGGAAACGAAAUGUGCAAUUAAAC .........(((....((....((((((((((.((((.(......).))))))))))))))....))(....)......)))........ ( -26.10, z-score = -0.83, R) >droEre2.scaffold_4690 5609174 90 + 18748788 CCAUGGCAAGCAAUAGAGAAAUUGGACGGUGCUGGCAACCCUGCAGCUGCUGCAUCGUCCAUCCGCUGGAAACGAAAUGUGCAAUUAAAC .....((((((....((....))(((((((((.((((.(......).)))))))))))))....)))(....)......)))........ ( -27.40, z-score = -1.23, R) >consensus CCAUGGCAAGCAAUAGAGAAAUUGGACGGUGCUGGCAAUCCUGCAGCUGCUGCAUCGUCCAUCCGCUGGAAACGAAAUGUGCAAUUAAAC .........(((....((....((((((((((.((((..........))))))))))))))....))(....)......)))........ (-27.28 = -27.04 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:27 2011