| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,738,926 – 13,739,022 |
| Length | 96 |
| Max. P | 0.898302 |
| Location | 13,738,926 – 13,739,022 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 75.04 |
| Shannon entropy | 0.40006 |
| G+C content | 0.35522 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -9.43 |
| Energy contribution | -14.67 |
| Covariance contribution | 5.25 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.60 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898302 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13738926 96 + 22422827 -CAUGACUGCCACUACGCCACUGUUUUCGUUAAUCAUUUGUAAUG-CAAAAUAAAUGCAAAAUGAGAACGGCGAAAAUUGGUUUCUUUUGAAACCAAU -..............((((...(((((((((...(((((((....-....)))))))...)))))))))))))...(((((((((....))))))))) ( -28.20, z-score = -4.50, R) >droSec1.super_20 386565 94 + 1148123 -CAUGACUGCC--UACGCCACUGUUUUCGUUAAUCAUUUGUAAUG-CAAAAUAAAUGCAAAAUGAGAACGGCGAAAAUUGGUUUCUUUUGAAACCAAU -..........--..((((...(((((((((...(((((((....-....)))))))...)))))))))))))...(((((((((....))))))))) ( -28.20, z-score = -4.67, R) >droYak2.chrX 8030906 95 + 21770863 ACAUGACCGC---UGCGCCACUGUUUUCGUUAAUCGUUUGUAAUGGCAAAAUAAAUGCAAAUUCAGAAUGGCGAAAAUUGGUUGCUUUUAAUACCAAU ....(((((.---(.((((((((..((.((......(((((....)))))......)).))..)))..)))))...).)))))............... ( -19.20, z-score = -0.12, R) >droEre2.scaffold_4690 5601304 72 - 18748788 ------------CUAGACCAAUCAUUUAGUCAAUCAUUUGCAAUG-CAGAAUAAACGC-------------CGAAAAUUGGUUUCUCUUAAUACCAAG ------------..((((((((..((..((......(((((...)-))))......))-------------..)).)))))))).............. ( -9.60, z-score = -1.12, R) >consensus _CAUGACUGC___UACGCCACUGUUUUCGUUAAUCAUUUGUAAUG_CAAAAUAAAUGCAAAAUGAGAACGGCGAAAAUUGGUUUCUUUUAAAACCAAU ...............((((...(((((((((...(((((((.........)))))))...)))))))))))))....((((((((....)))))))). ( -9.43 = -14.67 + 5.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:26 2011