| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,729,828 – 13,729,937 |
| Length | 109 |
| Max. P | 0.718860 |
| Location | 13,729,828 – 13,729,937 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 59.38 |
| Shannon entropy | 0.65642 |
| G+C content | 0.36629 |
| Mean single sequence MFE | -26.47 |
| Consensus MFE | -9.29 |
| Energy contribution | -10.72 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.718860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13729828 109 - 22422827 ----ACAAUUUUGGAGUGGCAUUAUCUGCCAAUCUAGUGAUAUUGCAACUAAGUCUUAGUUUUAAGUUCUAGAGAGUU--GUUCUUAGAGUGUGUACCCUUUAAAGAUUACACGC ----(((((((.....(((((.....))))).(((((.....(((.(((((.....))))).)))...))))))))))--)).......(((((((..((....))..))))))) ( -24.40, z-score = -0.86, R) >droAna3.scaffold_13047 1252052 107 - 1816235 AUAGGAUUUUUUUAGUUUUUAAUACUUGAGUAAUUAGUGUUUCAGAGACUGAAAAGUGACUUGACUUGGUGGAAAAUCCAGGCUUUCAGGCCUCUAGGUU---GAGUUUA----- .......(((((((((((((((((((.((....))))))))..))))))))))))).((((..(((((((((.....)))((((....)))).)))))).---.))))..----- ( -33.30, z-score = -3.32, R) >droYak2.chrX 8021650 96 - 21770863 -----------------GGCAUUAUCCGCCCAUCUAGUGAUAUUGAAACUUAGUCUUGGUUUUAAGUUCCGGAGAGUU--GUUUUUGGAAUGUAUGCCCUUUAAAGUUUACAAGC -----------------(((.......))).(((....))).(((((((((......(((.....((((((((((...--.))))))))))....))).....)))))).))).. ( -19.90, z-score = -0.59, R) >droSec1.super_20 377007 109 - 1148123 ----ACAAUUUUGGAGGGGCAUUUUCUGCCCAUCUAGUGAUAUUGAAACUAAGUCUUAGUUUUAAGUUCUAGAGAGUU--GUCCUUGGAGUGUGUACCCUUUAAAGAUUACAAGC ----....((((((((((((((.((((.....(((((.....(((((((((.....)))))))))...)))))(((..--...))))))).)))).))))))))))......... ( -28.30, z-score = -1.48, R) >consensus ____ACAAUUUUGGAGUGGCAUUAUCUGCCCAUCUAGUGAUAUUGAAACUAAGUCUUAGUUUUAAGUUCUAGAGAGUU__GUCCUUGGAGUGUGUACCCUUUAAAGAUUACAAGC ................(((((.....))))).(((((.....(((((((((.....)))))))))...))))).......((((((((((.(....).))))))))))....... ( -9.29 = -10.72 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:25 2011