| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,727,714 – 13,727,833 |
| Length | 119 |
| Max. P | 0.596665 |
| Location | 13,727,714 – 13,727,833 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 82.16 |
| Shannon entropy | 0.29181 |
| G+C content | 0.43143 |
| Mean single sequence MFE | -23.98 |
| Consensus MFE | -17.93 |
| Energy contribution | -18.49 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13727714 119 - 22422827 AUUUGUACAAUCGUGCAAAGGUUACUAAAUUGGCCGUCCUAACCUUCAGUUGUCUGCCUCUCCCGCUGCAUUAAACACAAUGCUGGCCACACUAAUCUCUAGCUAUUUCGCCCGCUAUA .(((((((....)))))))(((((......(((((...........(((....)))...........(((((......))))).)))))...)))))..((((..........)))).. ( -22.60, z-score = -0.77, R) >droEre2.scaffold_4690 5590539 117 + 18748788 UUUUGUACAAUCGUUCAAAGGGUAGAAAGUUGGCCACGCUAACCUGCAGUUGUCU--CUCUCUUGCUGCAUCAAACACAAUGCUGGUCACACUUAUCUCCAGCUAUUUUGGCCGCUACA (((((.((....)).))))).((((.....((((((........((((((.....--.......))))))...........(((((............))))).....)))))))))). ( -27.10, z-score = -0.51, R) >droYak2.chrX 8019454 117 - 21770863 AAUUGAACAAUCGUUCAAAAAUUACAAAGUUGGCCACUCUAAACUGCAGUUGUCU--CUCUCUUGCUGCAAUAAACACCAUGUUGGUCACACUAAUCUCCAGCUAUUUCGGCCGCUUCA ..((((((....))))))........((((.((((.........((((((.....--.......))))))...........(((((............)))))......)))))))).. ( -26.60, z-score = -3.12, R) >droSim1.chrX_random 699824 115 - 5698898 AUUUGUACAAUUAUGCAA----UACUAAAUUGGCCACCUUAAUCUGCAGUUGUCUCCCUCUCCUGCUGCAUUAAACAUAAUGCUGGUCACACUCAUCUCUAGCUAUUUCGCCCGCUAUA ..(((((......)))))----........((((((.........((((..(.......)..)))).((((((....))))))))))))..........((((..........)))).. ( -19.60, z-score = -1.38, R) >consensus AUUUGUACAAUCGUGCAAAGGUUACAAAAUUGGCCACCCUAACCUGCAGUUGUCU__CUCUCCUGCUGCAUUAAACACAAUGCUGGUCACACUAAUCUCCAGCUAUUUCGCCCGCUACA ..((((((....)))))).............((((.........((((((..............))))))...........(((((............)))))......))))...... (-17.93 = -18.49 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:24 2011