| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,712,194 – 13,712,286 |
| Length | 92 |
| Max. P | 0.520288 |
| Location | 13,712,194 – 13,712,286 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 80.07 |
| Shannon entropy | 0.36420 |
| G+C content | 0.50730 |
| Mean single sequence MFE | -21.62 |
| Consensus MFE | -15.16 |
| Energy contribution | -16.05 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.520288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13712194 92 - 22422827 UGGCUAUUACUUCAUCAGGCC-------CCAUCAUCAUCACCAACAAAC----UGCGGCGAUAACUUCCGCCGCCCAACUUUUGAUAAGAUAUGGCACAUACA ..(((((..(((.((((((..-------............)).......----.((((((........))))))........)))))))..)))))....... ( -20.04, z-score = -2.11, R) >droSim1.chrX 10502362 92 - 17042790 UGGCUAUUACUUCAUCAGGCA-------CCAUCAUCAUCAGCACCGAAC----UGCGGCGAUAACUUCCGCCGCCCGACUUUUGAUAAGAUAUGGCACAUACA ..(((((..(((.(((((((.-------............(((......----)))((((........))))))).......)))))))..)))))....... ( -21.31, z-score = -1.48, R) >droYak2.chrX 8003724 89 - 21770863 UGGCUAUUACUUCAUCAGGCC-------CCAUCAUCAUCAG---CGAAC----UGCGGCGAUAACUUCCGCCGCCCGACUUUUGAUAAGAUACGGCAUGUAUC .((((............))))-------.....((((..((---((...----.((((((........)))))).)).))..))))..(((((.....))))) ( -22.10, z-score = -0.98, R) >droEre2.scaffold_4690 5574943 90 + 18748788 UGGCUAUUACUUCAUCAGGGG-------CC-CCAUCAUCAUCCGCAAAC----UGCGGCGAUAACUUCCGCGGCCCGACUUUUGAUAAGAUAUGGCACAUAU- ..(((((..(((.((((((((-------((-...........(((....----.)))(((........)))))))).....))))))))..)))))......- ( -26.00, z-score = -1.46, R) >droSec1.super_20 359632 92 - 1148123 UGGCUAUUACUUCAUCAGGCA-------CCAUCAUCAUCACCACCGGAC----UGCGGCGAUAACUUCCGCCGCCCGACUUUUGAUAAGAUAUGGCACAUACA ..(((((..(((.((((((..-------............))..(((..----.((((((........))))))))).....)))))))..)))))....... ( -23.14, z-score = -2.12, R) >droAna3.scaffold_13047 1042677 98 - 1816235 UGGCCAUUACUUCAUCGCCCCGCCACGACCGUCAUCUUCGCUCCUCAUCACCGUGCGGCGAUAACUUCCGCCGAC-----UCCGAUAAGAUACAGCGCACAUC ((((.................)))).............((((.((.(((...((.(((((........)))))))-----...))).))....))))...... ( -17.13, z-score = 0.81, R) >consensus UGGCUAUUACUUCAUCAGGCC_______CCAUCAUCAUCACCACCGAAC____UGCGGCGAUAACUUCCGCCGCCCGACUUUUGAUAAGAUAUGGCACAUACA ..(((((..(((.((((((.........))........................((((((........))))))........)))))))..)))))....... (-15.16 = -16.05 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:20 2011