| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,711,540 – 13,711,600 |
| Length | 60 |
| Max. P | 0.835575 |
| Location | 13,711,540 – 13,711,600 |
|---|---|
| Length | 60 |
| Sequences | 3 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 78.97 |
| Shannon entropy | 0.29156 |
| G+C content | 0.33576 |
| Mean single sequence MFE | -13.42 |
| Consensus MFE | -11.39 |
| Energy contribution | -10.51 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13711540 60 + 22422827 GUUGUGGUUUUU-----------GCUUUUUUUUU--GACUAGCCACAGAGGCGGUGAAAAUCAUAGAUUUUUC .((((((((((.-----------.((.(((((.(--(......)).))))).))..))))))))))....... ( -15.00, z-score = -2.32, R) >droSim1.chrX 10501640 68 + 17042790 GUUGUGGUUUUUUUGUU-----UGUUUUUUUUUUCCGGCUAGCCACAGAGGCGGUGAAAACUAUAGAUUUUUA .(((((((((((.....-----............(((.((........)).))).)))))))))))....... ( -12.27, z-score = -0.56, R) >droSec1.super_20 358911 73 + 1148123 GUUAUGGUUUUUUUUUUGUUUGUCUUUUUUUUUUUUGGCUAGCCACAAAGGCGGUGAAAACUAUAGAUUUUUA .(((((((((((.........(((............)))..(((.....)))...)))))))))))....... ( -13.00, z-score = -1.38, R) >consensus GUUGUGGUUUUUUU_UU_____UGUUUUUUUUUU__GGCUAGCCACAGAGGCGGUGAAAACUAUAGAUUUUUA .(((((((((((.........................(((.(((.....)))))))))))))))))....... (-11.39 = -10.51 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:20 2011