| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,349,264 – 11,349,370 |
| Length | 106 |
| Max. P | 0.584029 |
| Location | 11,349,264 – 11,349,370 |
|---|---|
| Length | 106 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 78.27 |
| Shannon entropy | 0.40767 |
| G+C content | 0.27724 |
| Mean single sequence MFE | -22.76 |
| Consensus MFE | -4.82 |
| Energy contribution | -5.11 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.30 |
| Structure conservation index | 0.21 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.584029 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 11349264 106 - 23011544 UUUGGCCUGAAACAAUGAAACAAAUUCGAAAUUCAUUAAAUGA-----AUUUAUACAUUUAAUUUAUUGGCGC--GGCCUUUUAUCAAAAAAAAAUUGAUAA--AGAGGCAAUGA- ...((((((...(((((((..((((...((((((((...))))-----))))....))))..))))))).)).--))))(((((((((.......)))))))--)).........- ( -23.00, z-score = -2.66, R) >droSim1.chr2L 11155367 106 - 22036055 --CGGCCUGAAACAAUGAAACAAAUUCGAAAUUCAUUAAAUGA-----AUUUAUACAUUUAAUUUAUUGGCGC--GGCCUUUUUAUCAAAAAAAUUUGAUAAAGAGAGGCAAUGA- --..(((((...(((((((..((((...((((((((...))))-----))))....))))..)))))))...)--...((((((((((((....)))))))))))))))).....- ( -26.60, z-score = -3.77, R) >droSec1.super_3 6743823 106 - 7220098 --CGGCCUGAAACAAUGAAACAAAUUCGAAAUUCAUUAAAUGA-----AUUUAUACAUUUAAUUUAUUGGCGC--GGCCUUUUUAUCAAAAAAAUUUGAUAAAGAGAGGCAAUGA- --..(((((...(((((((..((((...((((((((...))))-----))))....))))..)))))))...)--...((((((((((((....)))))))))))))))).....- ( -26.60, z-score = -3.77, R) >droYak2.chr2L 7745054 93 - 22324452 -----CCUGAAACAAUGAAA-----UCGAAAUUCAUUAAAUGA-----AUUUAUACAUUUAAUUUAUUGGCGC--GGCCUUUUAUCA---AAAAUUUGAUGA--AGAGGCAAUGA- -----..((...(((((((.-----..(.....).(((((((.-----.......))))))))))))))...)--)(((((((((((---(....)))))).--)))))).....- ( -19.00, z-score = -1.86, R) >droEre2.scaffold_4929 12546530 93 + 26641161 -----CCUGGAACAAUGAAA-----UCGAAAUUCAUUAAAUGA-----AUUUAUACAUUUAAUUUAUUGGCGC--GGCCUUUUAUCA---CAAAUUUGAUAA--AGAGGCACUGA- -----.......(((((((.-----..(.....).(((((((.-----.......))))))))))))))....--.(((((((((((---......)))).)--)))))).....- ( -17.90, z-score = -1.74, R) >dp4.chr4_group3 6789083 99 - 11692001 ---GCUCUGAAACAAUAAAA-----AUGAAUUUCAUUUAAUGA-----AUUUAUACAUUUAAUUUAUUGGCUCUCGGCUUUUUAUCA---AAUUUUUGAUAAAGAGCAACAGAGG- ---.(((((...((((((((-----(((.....)))))..(((-----((......)))))..)))))).......(((((((((((---(....))))))))))))..))))).- ( -26.20, z-score = -4.96, R) >droPer1.super_1 8238193 99 - 10282868 ---GCUCUGAAACAAUAAAA-----AUGAAUUUCAUUUAAUGA-----AUUUAUACAUUUAAUUUAUUGGCUCUCGGCUUUUUAUCA---AAUUUUUGAUAAAGAGCAACAGAGG- ---.(((((...((((((((-----(((.....)))))..(((-----((......)))))..)))))).......(((((((((((---(....))))))))))))..))))).- ( -26.20, z-score = -4.96, R) >droWil1.scaffold_181038 378711 93 - 637489 -----GUUGAAACAAUAAAA-----GUAAAAUUCAUUAAAUGA-----AUUUAUACAUUUAAUUUAUUGGCGC---GGCUUUUAUCA---AA-AUUUGAUAAAGGCCAACAGCAA- -----((((...(((((((.-----(((((((((((...))))-----)))).)))......)))))))....---(((((((((((---..-...)))))))))))..))))..- ( -26.10, z-score = -5.17, R) >droVir3.scaffold_12963 18031540 93 + 20206255 -----CUUGAAACAAUAAAA-----AUGAAAUUCAUUAAAUGA-----AUUUAUACAUUUAAUUUAUUGGCGC--GGCCUUUUAU----CAAAAUUUGAUAAAG-CAGACAG-CGA -----.......((((((((-----(((((((((((...))))-----))))...))))...))))))).(((--.((..(((((----((.....))))))))-).....)-)). ( -17.20, z-score = -1.83, R) >droMoj3.scaffold_6500 4994239 104 + 32352404 ---AACGAGAAACAAUAAAA-----AUGAAAUUCAUUAAAUGAAAUUCAUUUAUACAUUUAAUUUAUUGGCGC--GGCUUUUUAUCA-ACAAAAUUUGAUAAAG-CAGACAGUCGA ---.........((((((((-----(((((.(((((...))))).))))))...........)))))))...(--((((((((((((-(......)))))))))-.....))))). ( -18.80, z-score = -2.30, R) >consensus ___G_CCUGAAACAAUAAAA_____UCGAAAUUCAUUAAAUGA_____AUUUAUACAUUUAAUUUAUUGGCGC__GGCCUUUUAUCA___AAAAUUUGAUAAAGAGAGACAGUGA_ ............(((..............(((..((((((((.............))))))))..)))(((.....)))................))).................. ( -4.82 = -5.11 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:10 2011