| Sequence ID | dm3.chr2L |
|---|---|
| Location | 993,246 – 993,340 |
| Length | 94 |
| Max. P | 0.702069 |
| Location | 993,246 – 993,340 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 75.13 |
| Shannon entropy | 0.39468 |
| G+C content | 0.46123 |
| Mean single sequence MFE | -26.05 |
| Consensus MFE | -15.43 |
| Energy contribution | -15.55 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.702069 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 993246 94 - 23011544 UCCAGCUUGAAAUAGGUAUUUCUUAAACAAACCGAAUUGUAUAUUUUUCAGUGCA-----CUCGAGGGUCCAUUUCUAGGCCCAUUUGAGUCGCAGGGC (((...((((((...(((((((...........)))..))))...))))))((((-----((((((((((........)))))..)))))).)))))). ( -22.40, z-score = -0.98, R) >droSim1.chr2L 977089 99 - 22036055 UCCAGCUUGAAAUGGGUAUUCUUUAAACGAUCCAAAUUGUAUAUUUCUCAGUGCAUAUUUCUCGAGGGUCCAUUCCUAGGCCCAUUUGAGUCGCUGGGC ((((((((.((((((((..........(((.......(((((........)))))......)))((((.....))))..)))))))).))..)))))). ( -27.52, z-score = -1.72, R) >droSec1.super_14 956603 94 - 2068291 UCCAGCUUGAAAUGGGUAUUCUUCAAACGAUCCGAAUUGUAUAUUUCUCAGUGCA-----CUCUAGGGUCCAUUCCCAGGCCCAUUUGAGUCGCUGGGC ((((((((.((((((((...........(((((....(((((........)))))-----.....))))).........)))))))).))..)))))). ( -28.35, z-score = -1.80, R) >droEre2.scaffold_4929 1046328 79 - 26641161 UCCGGCUUCAAGUGGGCACUUUUUGAGUGUAUC----CACAUAUUUCUCAGUGCA-----CUCGGGGGUCCAUUCCUGGACCCAUUUG----------- .((.((((.....)))).......((((((((.----.............)))))-----)))))(((((((....))))))).....----------- ( -25.94, z-score = -2.16, R) >consensus UCCAGCUUGAAAUGGGUAUUCUUUAAACGAACCGAAUUGUAUAUUUCUCAGUGCA_____CUCGAGGGUCCAUUCCUAGGCCCAUUUGAGUCGCUGGGC .(((((.........(((((...((.((((......)))).))......)))))...........(((((........))))).........))))).. (-15.43 = -15.55 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:29 2011