| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,709,870 – 13,709,969 |
| Length | 99 |
| Max. P | 0.997163 |
| Location | 13,709,870 – 13,709,969 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 97.94 |
| Shannon entropy | 0.03646 |
| G+C content | 0.48037 |
| Mean single sequence MFE | -35.64 |
| Consensus MFE | -29.50 |
| Energy contribution | -29.90 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.920778 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13709870 99 + 22422827 AGAUCGAUGGCAUUGCUGCAGCUGAGAAGCAGCUAAAGCCUAACAACACAUCACACAAAUGAUGACGAUGAUGUCAUCAGGCGUGCGGUGUGUGAAGUU ...((...(((.(((((((.........))))).)).))).....(((((((.(((...(((((((......)))))))...))).))))))))).... ( -35.30, z-score = -2.48, R) >droEre2.scaffold_4690 5572762 96 - 18748788 AGAUCGAUGGCAUUGCUGCAGCUGAGAAGCAGCUAAAGCCAAACA---CAUCACACAAAUGAUGACGAUGAUGUCAUCAGGCGUGCGGUGUGUGAAGUU ...((..((((.(((((((.........))))).)).)))).(((---((((.(((...(((((((......)))))))...))).))))))))).... ( -36.80, z-score = -3.12, R) >droYak2.chrX 8001522 96 + 21770863 AGAUCGAUGGCAUUGCUGCAGCUGAGAAGCAGCUAAAGCCAAACA---CAUCACACAAAUGACGACGAUGAUGUCAUCAGGCGUGCGGUGUGUGAAGUU ...((..((((.(((((((.........))))).)).)))).(((---((((.(((...(((.(((......))).)))...))).))))))))).... ( -32.50, z-score = -1.70, R) >droSec1.super_20 357248 96 + 1148123 AGAUCGAUGGCAUUGCUGCAGCUGAGAAGCAGCUAAAGCCAAACA---CAUCACACAAAUGAUGACGAUGAUGUCAUCAGGCGUGCGGUGUGUGAAGUU ...((..((((.(((((((.........))))).)).)))).(((---((((.(((...(((((((......)))))))...))).))))))))).... ( -36.80, z-score = -3.12, R) >droSim1.chrX 10499970 96 + 17042790 AGAUCGAUGGCAUUGCUGCAGCUGAGAAGCAGCUAAAGCCAAACA---CAUCACACAAAUGAUGACGAUGAUGUCAUCAGGCGUGCGGUGUGUGAAGUU ...((..((((.(((((((.........))))).)).)))).(((---((((.(((...(((((((......)))))))...))).))))))))).... ( -36.80, z-score = -3.12, R) >consensus AGAUCGAUGGCAUUGCUGCAGCUGAGAAGCAGCUAAAGCCAAACA___CAUCACACAAAUGAUGACGAUGAUGUCAUCAGGCGUGCGGUGUGUGAAGUU .......((((.(((((((.........))))).)).))))..((...((((.(((...(((((((......)))))))...))).))))..))..... (-29.50 = -29.90 + 0.40)
| Location | 13,709,870 – 13,709,969 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 97.94 |
| Shannon entropy | 0.03646 |
| G+C content | 0.48037 |
| Mean single sequence MFE | -37.04 |
| Consensus MFE | -30.74 |
| Energy contribution | -30.58 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -4.38 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.05 |
| SVM RNA-class probability | 0.997163 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13709870 99 - 22422827 AACUUCACACACCGCACGCCUGAUGACAUCAUCGUCAUCAUUUGUGUGAUGUGUUGUUAGGCUUUAGCUGCUUCUCAGCUGCAGCAAUGCCAUCGAUCU (((...(((((.((((((..(((((((......)))))))..)))))).))))).))).(((.((.(((((.........))))))).)))........ ( -37.20, z-score = -4.16, R) >droEre2.scaffold_4690 5572762 96 + 18748788 AACUUCACACACCGCACGCCUGAUGACAUCAUCGUCAUCAUUUGUGUGAUG---UGUUUGGCUUUAGCUGCUUCUCAGCUGCAGCAAUGCCAUCGAUCU ....(((((((.((((((..(((((((......)))))))..)))))).))---))).((((.((.(((((.........))))))).))))..))... ( -37.10, z-score = -4.54, R) >droYak2.chrX 8001522 96 - 21770863 AACUUCACACACCGCACGCCUGAUGACAUCAUCGUCGUCAUUUGUGUGAUG---UGUUUGGCUUUAGCUGCUUCUCAGCUGCAGCAAUGCCAUCGAUCU ....(((((((.((((((..(((((((......)))))))..)))))).))---))).((((.((.(((((.........))))))).))))..))... ( -36.70, z-score = -4.13, R) >droSec1.super_20 357248 96 - 1148123 AACUUCACACACCGCACGCCUGAUGACAUCAUCGUCAUCAUUUGUGUGAUG---UGUUUGGCUUUAGCUGCUUCUCAGCUGCAGCAAUGCCAUCGAUCU ....(((((((.((((((..(((((((......)))))))..)))))).))---))).((((.((.(((((.........))))))).))))..))... ( -37.10, z-score = -4.54, R) >droSim1.chrX 10499970 96 - 17042790 AACUUCACACACCGCACGCCUGAUGACAUCAUCGUCAUCAUUUGUGUGAUG---UGUUUGGCUUUAGCUGCUUCUCAGCUGCAGCAAUGCCAUCGAUCU ....(((((((.((((((..(((((((......)))))))..)))))).))---))).((((.((.(((((.........))))))).))))..))... ( -37.10, z-score = -4.54, R) >consensus AACUUCACACACCGCACGCCUGAUGACAUCAUCGUCAUCAUUUGUGUGAUG___UGUUUGGCUUUAGCUGCUUCUCAGCUGCAGCAAUGCCAUCGAUCU ....((...((.((((((..(((((((......)))))))..)))))).))........(((.((.(((((.........))))))).)))...))... (-30.74 = -30.58 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:17 2011