| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,689,156 – 13,689,276 |
| Length | 120 |
| Max. P | 0.560258 |
| Location | 13,689,156 – 13,689,276 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.18 |
| Shannon entropy | 0.43237 |
| G+C content | 0.31273 |
| Mean single sequence MFE | -20.58 |
| Consensus MFE | -10.26 |
| Energy contribution | -10.38 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.560258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13689156 120 + 22422827 AUUAACUAGCGCAACAUCCUGCCCAUUUCCCUAGUAAGCUUUGUAAGUUCUUUAUUGUGUGUUAUUUUGUAUAACGACUUAAUAAUACAGAAAUGCCUUUAACAAUCAUUUAUAGAAUAU .....(((..(((......))).((((((..(((..((((.....))))..)))...(((((((((..((......))..))))))))))))))).................)))..... ( -16.50, z-score = -0.33, R) >droSim1.chrX 10477137 118 + 17042790 AUUUACUGGCGCAACUUCCUGCCCAUUUCCCUAGUAAGCUUUGUAAGCUCUUUAUUCUGUGUUAUUUUGUAUAACGACUUAAUAAUACAGAAAUUCCAAUAAUAAGCAUUUAUGGAAA-- ......(((.(((......))))))......(((..((((.....))))..)))((((((((((((..((......))..)))))))))))).(((((.(((.......)))))))).-- ( -26.90, z-score = -3.36, R) >droSec1.super_20 335467 118 + 1148123 AUUUACUGGCGCAACUUCCUGCCUAUUUCCCUAGUAAGCUUUGUAAGCUCUUUAUUCUGUGUUAUUUUGUAUAACGACUUAAUAAUACAGAAAUUCCAAUAAUAAGCAUUUAUGGCAA-- ..(((((((.(((......)))........)))))))(((.((...(((..(((((((((((((((..((......))..))))))))))).......))))..)))...)).)))..-- ( -24.51, z-score = -2.28, R) >droYak2.chrX 7980300 115 + 21770863 AUUAACUAGCGCAACUUCCUGCCCAUUUCCCUAUUGAGCUU---GAGGGCUUUAUUUUGUGUUAUUUUGUAUAACCACUUAAUAAUACAGAAAUCCCUUCAACAGGCAUUUAUAGAAA-- ........(.(((......))).)......((((.((((((---(((((.....((((((((((((..((......))..))))))))))))..))))....))))).)).))))...-- ( -24.70, z-score = -2.40, R) >droEre2.scaffold_4690 5552346 92 - 18748788 --------------------AUUAACUAGCGCAAC-ACCUUUGUAAGCUCUUUAUUUUGUAUUAUUUUGUAUAACGAAUUAAUAAUACAGGUAUCCCUUUAACAAGCAUUUAU------- --------------------........((((((.-....))))...........((((((((((((((.....)))...)))))))))))..............))......------- ( -10.30, z-score = 0.04, R) >consensus AUUAACUAGCGCAACUUCCUGCCCAUUUCCCUAGUAAGCUUUGUAAGCUCUUUAUUCUGUGUUAUUUUGUAUAACGACUUAAUAAUACAGAAAUCCCUUUAACAAGCAUUUAUAGAAA__ ......................................................((((((((((((..((......))..))))))))))))............................ (-10.26 = -10.38 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:11 2011