| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,688,715 – 13,688,792 |
| Length | 77 |
| Max. P | 0.913199 |
| Location | 13,688,715 – 13,688,792 |
|---|---|
| Length | 77 |
| Sequences | 6 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 91.00 |
| Shannon entropy | 0.17155 |
| G+C content | 0.33202 |
| Mean single sequence MFE | -16.18 |
| Consensus MFE | -12.86 |
| Energy contribution | -13.58 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13688715 77 - 22422827 AUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCGAACAUUGCCUGCGAAUACAUUUUCUUAAAGUCUAUAAA .((((.((((((((((((((((.....)))))...))))))).........(((......)))....)))).)))). ( -15.90, z-score = -2.27, R) >droSim1.chrX 10476696 77 - 17042790 AUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCGAACGCUGCCUGCGAAUACAUUUUCUUAAAGUCUAUAAA .((((.((((((((((((((((.....)))))...)))))))((.....))(((......)))....)))).)))). ( -17.30, z-score = -2.66, R) >droSec1.super_20 335122 77 - 1148123 AUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCGAACGCUGCCUGCGAAUACAUUUUCUUAAAGUCUAUAAA .((((.((((((((((((((((.....)))))...)))))))((.....))(((......)))....)))).)))). ( -17.30, z-score = -2.66, R) >droYak2.chrX 7979862 77 - 21770863 AUUGUUGACUGUUUGCAUUUGGUAAUACUAAAUUUAGCAAACGCUGCCUGCGAAUCCAUUUACUUAAAGUCUAUAAA .((((.((((((((((((((((.....))))))...))))))((.....))................)))).)))). ( -17.00, z-score = -2.49, R) >droEre2.scaffold_4690 5551937 77 + 18748788 AUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCAAACGCUGCCUGCGAAUCCAUUUACUUAAAGUCUAUAAA .((((.((((((((((((((((.....)))))...)))))))((.....))................)))).)))). ( -17.50, z-score = -2.93, R) >droAna3.scaffold_13047 1021189 76 - 1816235 AUUGUUGACUGUUUGCUUCUGGCCAUACUAAAUUUAGC-CCUGCCCGUUGCGAAUCCGUUUACUUAAAGUCUAUUAA ...((.(((.((((((..(.(((....(((....))).-...))).)..))))))..))).)).............. ( -12.10, z-score = -1.05, R) >consensus AUUGUUGACUGUUUGCUUUUGGUAAUACUAAAUUUAGCGAACGCUGCCUGCGAAUACAUUUACUUAAAGUCUAUAAA .((((.((((((((((((((((.....)))))...)))))))((.....))................)))).)))). (-12.86 = -13.58 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:10 2011