| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,681,978 – 13,682,034 |
| Length | 56 |
| Max. P | 0.955646 |
| Location | 13,681,978 – 13,682,034 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 78.93 |
| Shannon entropy | 0.40789 |
| G+C content | 0.55060 |
| Mean single sequence MFE | -19.98 |
| Consensus MFE | -13.29 |
| Energy contribution | -13.77 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.955646 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13681978 56 + 22422827 CUCCAAACUUCUCCUCUCAACUGCGGAGGAGGAUUCGCGACGAAGGAUUGCGGAUG .......(((((((.(......).))))))).(((((((((....).)))))))). ( -21.00, z-score = -2.64, R) >droSim1.chrX 10468866 56 + 17042790 CUCCGAACUUCUCCUCUCAACUGCGGAGGAGGAUUCGCGACGAAGGAUUGCGGAUG .((((((.(((((((((.......))))))))))))(((((....).))))))).. ( -22.30, z-score = -2.65, R) >droSec1.super_20 320505 56 + 1148123 CUCCGAACUUCUCCUCUCAACUGCGGAGGAGGAUUCGCGACGAAGGAUUGCGGAUG .((((((.(((((((((.......))))))))))))(((((....).))))))).. ( -22.30, z-score = -2.65, R) >droYak2.chrX 7974000 56 + 21770863 CUUCGAGCUUCUUCUGUCAACUGCGGAGGAGGAAUCGCGACGAAGGAUUGCGGAUG .......((((((((((.....))))))))))..(((((((....).))))))... ( -19.40, z-score = -1.59, R) >droEre2.scaffold_4690 5545898 56 - 18748788 CUUCGAGCUUCUCCUCUCCACUGAGGAGGAGGAAUCGCGACGAAGGAUUGCGGAUG .......(((((((((......)))))))))...(((((((....).))))))... ( -22.80, z-score = -2.03, R) >droGri2.scaffold_15203 9710033 56 + 11997470 CGUCUGACACCCCCCAUAAACUUUGGAAGGAUUUUUGCUUGUUAGUAGCGGGGAUG .........(((((((.......)))..........(((.......)))))))... ( -12.10, z-score = -0.05, R) >consensus CUCCGAACUUCUCCUCUCAACUGCGGAGGAGGAUUCGCGACGAAGGAUUGCGGAUG .......(((((((.(......).))))))).(((((((((....).)))))))). (-13.29 = -13.77 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:09 2011