Locus 14492

Sequence ID dm3.chrX
Location 13,680,678 – 13,680,805
Length 127
Max. P 0.947746
window19948

overview

Window 8

Location 13,680,678 – 13,680,805
Length 127
Sequences 3
Columns 127
Reading direction reverse
Mean pairwise identity 92.13
Shannon entropy 0.10846
G+C content 0.33858
Mean single sequence MFE -29.95
Consensus MFE -24.11
Energy contribution -24.34
Covariance contribution 0.23
Combinations/Pair 1.11
Mean z-score -2.69
Structure conservation index 0.81
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.53
SVM RNA-class probability 0.947746
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 13680678 127 - 22422827
AUUCGAUCUCAGCUGCCUUAACUUACAUGUAUAAGCAUGUACAAAAGGCUAAUUAAGCUACAAAUUCAUUGAUUUAUUCCAUUCGAUGAUAUAAUGGACCCAUGGUCCAAUAAAUGUGAUUGAAAUG
.(((((((..(((((((((....(((((((....)))))))...)))))......))))(((...(((((((..........))))))).....((((((...)))))).....))))))))))... ( -36.20, z-score =  -4.66, R)
>droSec1.super_20 319313 127 - 1148123
AUUCCAACUCAGCUUCUUAAACUUACAUGCAUAAGCGUGUACAAAAGGCUAAUUAAGUUACAAGUUCGUUGAUUUAUUCCAUUCGAUGAUAUAAUGGACCCAUGGUCCAAUAAAAGUGAUUGAAUUG
..........(((((........(((((((....)))))))....)))))((((.((((((....(((((((..........))))))).....((((((...))))))......)))))).)))). ( -29.10, z-score =  -2.46, R)
>droSim1.chrX 10467630 127 - 17042790
AUUCCAUCUCAGCUUUCUAAACUUACAUGCAUAAGCAUGCACAAAAGGCUAAUUAAGUUACAAGUUCGUUGCUUUAUUCCAUUCGAUGAUAUAAUGGACCCAUGGUCCAAUAAAAGUGAUUGAAAUG
....(((.((((((((.........(((((....))))).....)))))).....((((((....((((((..(......)..)))))).....((((((...))))))......)))))))).))) ( -24.54, z-score =  -0.96, R)
>consensus
AUUCCAUCUCAGCUUCCUAAACUUACAUGCAUAAGCAUGUACAAAAGGCUAAUUAAGUUACAAGUUCGUUGAUUUAUUCCAUUCGAUGAUAUAAUGGACCCAUGGUCCAAUAAAAGUGAUUGAAAUG
....(((.((((((.........(((((((....))))))).....)))).....((((((....(((((((..........))))))).....((((((...))))))......)))))))).))) (-24.11 = -24.34 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:41:07 2011