| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,345,274 – 11,345,372 |
| Length | 98 |
| Max. P | 0.944570 |
| Location | 11,345,274 – 11,345,372 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 75.45 |
| Shannon entropy | 0.49663 |
| G+C content | 0.41192 |
| Mean single sequence MFE | -19.85 |
| Consensus MFE | -7.95 |
| Energy contribution | -7.76 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11345274 98 - 23011544 -UUAAGCGAAAGACCUUUCAUAUUUCAGCCAAUUAGGAA-AACGAUCGCA--ACAGCA--CAUCCAACAAGCAUCACUAAUUGG-CAGACGUUUAACACUCCCCC------- -((((((((((....))))........(((((((((((.-.....))((.--...)).--................))))))))-)....)))))).........------- ( -19.90, z-score = -3.76, R) >droSim1.chr2L 11151485 98 - 22036055 -UUAAGCGAAAGGCCUUUCAUAUUUCAGCCAAUUAGGAA-AACGAUCGCA--ACAGCA--CAUCCAACAAGCAUCACUAAUUGG-CAGACGUUUAACACUCCCCC------- -((((((((((....))))........(((((((((((.-.....))((.--...)).--................))))))))-)....)))))).........------- ( -19.90, z-score = -2.89, R) >droSec1.super_3 6739875 98 - 7220098 -UUAAGCGAAAGGCCUUUCAUAUUUCAGCCAAUUAGGAA-AACGAUCGCA--ACAGCA--CAUCCAACAAGCAUCACUAAUUGG-CAGACGUUUAACACUCCCCC------- -((((((((((....))))........(((((((((((.-.....))((.--...)).--................))))))))-)....)))))).........------- ( -19.90, z-score = -2.89, R) >droYak2.chr2L 7741113 98 - 22324452 -UUAAGCGAAAGGCAUUUCAUAUUUUAGCCAAUUAGGAG-AACGAUCGCA--GCAACA--GAUCCAACAAGCAUCACUAAUUGG-CAGACGUUUAACACUCCCCC------- -((((((((((....))))........(((((((((((.-...((((...--......--)))).........)).))))))))-)....)))))).........------- ( -21.02, z-score = -3.01, R) >droEre2.scaffold_4929 12542419 96 + 26641161 -UUAAGCG-UAGGCCUUUCAUAUUUUAGCCAAUUAGGAG-AACGAUCGCA--ACAACA--GAUCCAACAAGCAUCACUAAUUGG-CAGACGUUUAACACUCCCC-------- -(((((((-(.((....))........(((((((((((.-...((((...--......--)))).........)).))))))))-)..))))))))........-------- ( -20.52, z-score = -2.88, R) >droAna3.scaffold_12916 12058954 98 + 16180835 AAGAUCCGAGAAGCAUUUCAUAUUUUAGCCAAUUAGGAG-AACGUUGCCA--A----------CAAACAAGCAUCACUAAUUGG-CAGACGUUUAACACUCCCCCAAUCCCA .......((((....))))........(((((((((((.-...(((....--.----------..))).....)).))))))))-).......................... ( -16.00, z-score = -1.59, R) >dp4.chr4_group3 6783007 87 - 11692001 -UUAAGCGAAAGGCAUUUCAUAUUUUAGCCAAUUAGGAG-AACGAUCG---------------GCAACAAGCAACACUAAUUGG-CAGACAUUUAACACUCCCCC------- -......((((....))))........(((((((((((.-.....))(---------------....)........))))))))-)...................------- ( -17.00, z-score = -2.23, R) >droPer1.super_1 8232052 87 - 10282868 -UUAAGCGAAAGGCAUUUCAUAUUUUAGCCAAUUAGGAG-AACGAUCG---------------GCAACAAGCUACACUAAUUGG-CAGACAUUUAACACUCCCCC------- -......((((....))))........(((((((((((.-.....))(---------------((.....)))...))))))))-)...................------- ( -17.60, z-score = -2.24, R) >droWil1.scaffold_181038 252796 96 + 637489 UUAAAUGAAAACACAUUUCAUAUUUUAGCCAAUUAGAG--AGUGGAAACA-----------AUCAUCAAGGCAGAACUAAUUGGUUAGCCAUUUAACACUUACCCCCCA--- ....((((((.....))))))...((((((((((((.(--(.((....))-----------.)).((......)).)))))))))))).....................--- ( -20.10, z-score = -3.26, R) >droVir3.scaffold_12963 18027578 99 + 20206255 UUAAAUUGAAUAGCAAUUCAUAUUUAAGCCAAUUAGGGG-AACGAUCUUU--AUGGAG--CAUCGAACAGACGGCACUAAUUGG-CAGGCAUUUAACACUUUCCC------- (((((((((((....))))).))))))((((((((((..-..)((((((.--...)))--.)))............))))))))-)...................------- ( -20.60, z-score = -1.81, R) >droMoj3.scaffold_6500 4986807 100 + 32352404 UUAAAUUGUAUGGCAAUUCAUAUUUUAGCCAAUUAGGGGAAACGAUCUCA--AUGGAG--CAUCGAACAGACGGCACUAAUUGG-CAGGCAUUUAACACUUUCCC------- ((((((.((((((....))))))....(((((((((.(....)((((((.--...)))--.)))............))))))))-)....)))))).........------- ( -22.30, z-score = -1.72, R) >droGri2.scaffold_15126 7154129 103 + 8399593 UUAAAUUGAAUAGCAAUUCAUAUUUUAGCCAAUUAGGGG-AACGAUCUCUCAAUGGAGCUCAACGAGCAGACGGCACUAAUUGG-CAGGCAUUUAACACUUUCCC------- .((((.(((((....)))))...))))((((((((((((-(......))))......((((...))))........))))))))-)...................------- ( -23.40, z-score = -1.86, R) >consensus _UUAAGCGAAAGGCAUUUCAUAUUUUAGCCAAUUAGGAG_AACGAUCGCA__ACAGCA__CAUCCAACAAGCAUCACUAAUUGG_CAGACAUUUAACACUCCCCC_______ .......((((....))))........(((((((((........................................)))))))).).......................... ( -7.95 = -7.76 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:32:09 2011