| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,618,002 – 13,618,096 |
| Length | 94 |
| Max. P | 0.838873 |
| Location | 13,618,002 – 13,618,096 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 73.48 |
| Shannon entropy | 0.46175 |
| G+C content | 0.57743 |
| Mean single sequence MFE | -33.70 |
| Consensus MFE | -23.21 |
| Energy contribution | -22.59 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.838873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13618002 94 + 22422827 UCAUACGCUGCUGGAUCAGUACUCACAGGAUCAAGGAGCAGUGGCACAACUGCCACCGGCAG---------------AUGUUAGU---CUCCUUCAACCAGCGGCAAGUUCC ......(((((((((((.((....))..))))((((((.(.(((((...(((((...)))))---------------.))))).)---))))))....)))))))....... ( -34.00, z-score = -2.77, R) >droSec1.super_20 256357 94 + 1148123 UCAUACGCUGCUGGAUCAGUACUCACAGGAUCAAGGAGCAGUGGCACAACUGCCACCGGCAG---------------AUGUCAGU---CUCCUUCAACCAGCGGCAAGUUCC ......(((((((((((.((....))..))))((((((.(.(((((...(((((...)))))---------------.))))).)---))))))....)))))))....... ( -36.10, z-score = -3.35, R) >droYak2.chrX 7912159 94 + 21770863 UCAUACCCUGCUGGAUCAGUACUCACAGGAUCAAGGAGCAGUGGCACAGCUGCCACCGGCGG---------------AUGUCAGU---CUCCUCCAACCAGCGGCAAGUUCC .......(((((((....((....)).(((....((((.(.(((((...(((((...)))))---------------.))))).)---)))))))..)))))))........ ( -31.60, z-score = -1.10, R) >droEre2.scaffold_4690 5482983 94 - 18748788 UCAUACCUUGCUGGAUCAGUACUCACAGGAUCAAGGAGCAGUGGCACAGCUGCCACCGGCGG---------------AUGUCAGU---CUCCUCCAACCAGCGGCAAGUUCC ......(((((((((((.((....))..)))).(((((.(.(((((...(((((...)))))---------------.))))).)---)))))........))))))).... ( -31.90, z-score = -1.34, R) >droAna3.scaffold_13248 2839929 94 + 4840945 CAACCAGCUGCUGGGCCAGUAUUCGCAGGAUCAGGGUGCAGUGGCUCAGUUGCCGCCAGUGG---------------ACAUAAGC---GUCCUUCAUCCGGCCGCCAGUUCC .(((..((.(((((((((((((((.........))))))..))))))))).((((.....((---------------((......---))))......)))).))..))).. ( -32.00, z-score = -0.04, R) >dp4.chrXL_group1e 1260515 112 + 12523060 CGUGGAGCUGCUUAAUCAGUAUUCGCAGGACCAAGAGCCAGUGGCACAGCUGCCGCCCACAGCUGCGGCCAAUCCAGAAGUGAGCAUGCUCCUCAAUCCGGCAGCAAGUUCC ...(((((((((((.((..........((........))..((((.((((((.......))))))..)))).....))..))))).((((((.......)).)))))))))) ( -34.10, z-score = 0.44, R) >droPer1.super_18 107290 112 + 1952607 CGUGGAGCUGCUUAAUCAGUAUUCGCAGGACCAAGAGCCAGUGGCACAGCUGCCGCCCACAGCUGUGGCCAAUCCAGAAGUGAGCAUGCUCCUCAAUCCGGCAGCAAGUUCC ...(((((((((((.((..........((........))..(((((((((((.......))))))).)))).....))..))))).((((((.......)).)))))))))) ( -36.20, z-score = -0.27, R) >consensus UCAUACGCUGCUGGAUCAGUACUCACAGGAUCAAGGAGCAGUGGCACAGCUGCCACCGGCAG_______________AUGUCAGU___CUCCUCCAACCAGCGGCAAGUUCC ......((((((((....((....))((((..........(((((......))))).((((.................)))).......))))....))))))))....... (-23.21 = -22.59 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:57 2011