| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,606,587 – 13,606,639 |
| Length | 52 |
| Max. P | 0.907821 |
| Location | 13,606,587 – 13,606,639 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 90.38 |
| Shannon entropy | 0.13644 |
| G+C content | 0.27564 |
| Mean single sequence MFE | -6.10 |
| Consensus MFE | -6.76 |
| Energy contribution | -6.10 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.50 |
| Structure conservation index | 1.11 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.907821 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13606587 52 + 22422827 UAUGUACAUAUGUUGUUUAACAAUCUUCUACCAAGGUGUAUAUUAAAUUUCU .((((((((..((((.....))))(((.....)))))))))))......... ( -5.70, z-score = -0.31, R) >droSim1.chrX_random 3687929 52 + 5698898 UAUGUACACAAAUUGUUCAACAAUCUUCUACUAAGGUGUAUGUUAAAUUUCC .((((((((..((((.....))))(((.....)))))))))))......... ( -6.30, z-score = -0.69, R) >droSec1.super_20 244966 52 + 1148123 UAUGUACACACAUUGUUCAACAAUCUUCUACUAAGGUGUAUGUUAAAUUUCU .((((((((..((((.....))))(((.....)))))))))))......... ( -6.30, z-score = -0.51, R) >consensus UAUGUACACAAAUUGUUCAACAAUCUUCUACUAAGGUGUAUGUUAAAUUUCU .((((((((..((((.....))))(((.....)))))))))))......... ( -6.76 = -6.10 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:54 2011