| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,583,976 – 13,584,073 |
| Length | 97 |
| Max. P | 0.921093 |
| Location | 13,583,976 – 13,584,073 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 58.07 |
| Shannon entropy | 0.78425 |
| G+C content | 0.44292 |
| Mean single sequence MFE | -30.00 |
| Consensus MFE | -6.50 |
| Energy contribution | -8.87 |
| Covariance contribution | 2.37 |
| Combinations/Pair | 1.71 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.921093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13583976 97 - 22422827 -----------UCUCCAGUUUGGAUUUGAAUUUGAAUUUGAGUUUU--AGCUCGACUUCGGGCUUCGGUUUAGGGGAGAAUGUUCCUGUCAGCCAUCAAGCGGGAGAAAU -----------(((((.((((((....(((((((((.((((((...--.)))))).)))))).)))((((.(.(((((....))))).).)))).)))))).)))))... ( -35.20, z-score = -2.95, R) >droSim1.chrX 10412545 96 - 17042790 -----------UCUCCAGUUUGGAUUUGAAUUUGAAUUUGAGUUUG--AGUUUUAGCUCGACU-UCGGUUGAGGGGAGAAUGUUCCUGUCAGCCAUCAAGCGGGAGAAAU -----------(((((.((((((..........(((.(((((((..--......))))))).)-))((((((.(((((....))))).)))))).)))))).)))))... ( -38.90, z-score = -4.65, R) >droSec1.super_20 223442 84 - 1148123 -----------UCUCCAGUUUGG------AUUUGAAUUUGAGUUUU--AGCUCGACUUCGGUU-----GA--GGGGAGAAUGUUCCUGUCAGCCAUCAAGCGGGAGAAAU -----------(((((.((((((------....(((.((((((...--.)))))).)))((((-----((--.(((((....))))).)))))).)))))).)))))... ( -38.10, z-score = -5.34, R) >droYak2.chrX 7867986 73 - 21770863 -----------UCUCCAGUUUGC------AUUUGAAUUUGAGUUUC--GGCU----------------AU--GGGGAGAAUGUUCCUGUCAGCCAUCAAGCGGGAGAAAU -----------(((((.(((((.------....(((.......)))--((((----------------((--(((((.....))))))).))))..))))).)))))... ( -24.50, z-score = -2.23, R) >droEre2.scaffold_4690 5449523 89 + 18748788 -----------UCUCCAGUUUGC------AUUUGAAUUUGAGUUUU--AGCUCGACUUUGGGUUUCGGUU--GUGGAGAAGGUUCCUGUCAGCCAUCAAGCGGGAGAAAU -----------(((((.(((((.------(((..((.((((((...--.)))))).))..)))...((((--(.((((....))))...)))))..))))).)))))... ( -30.90, z-score = -2.72, R) >droPer1.super_18 75128 105 - 1952607 CCAGCAUUGCUUUGAUGGUUUGAGGCU--UUUGGGCUUUGAGGUUUGGGGUUCGGGAGCGUGUGUUCGUUCCCCCUGUCAGGCGGCCGUCAACAA---ACCAGGAGAAAU (((((...)))(((((((((..(((((--....)))))..).((((((.(...(((((((......)))))))..).)))))).))))))))...---....))...... ( -34.50, z-score = 0.09, R) >droVir3.scaffold_12472 520343 81 + 763072 -----------UUUCCAAUUUGAAUUUGAAUCCGAAUCCGAAUCUG--AAUUAGACUUUGGUUUUAUUAUUUUUUCACAACUGACGCGAGAUCC---------------- -----------.........((((...((((..(((.(((((((((--...)))).))))).)))...)))).)))).......(....)....---------------- ( -7.90, z-score = 1.53, R) >consensus ___________UCUCCAGUUUGG___U__AUUUGAAUUUGAGUUUU__AGCUCGACUUCGGGU_UCGGUU__GGGGAGAAUGUUCCUGUCAGCCAUCAAGCGGGAGAAAU ...........(((((.(((((.........((((..((((((......))))))..))))...........((((......))))..........))))).)))))... ( -6.50 = -8.87 + 2.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:50 2011