| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,578,152 – 13,578,204 |
| Length | 52 |
| Max. P | 0.511682 |
| Location | 13,578,152 – 13,578,204 |
|---|---|
| Length | 52 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 83.78 |
| Shannon entropy | 0.28515 |
| G+C content | 0.44637 |
| Mean single sequence MFE | -13.01 |
| Consensus MFE | -7.78 |
| Energy contribution | -8.02 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.511682 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13578152 52 - 22422827 AUAAUCUGUGGCCAAGUCAUAGAUCACCUGAUGCCUUAUCA-GGCCAUAAAUC ...(((((((((...)))))))))..(((((((...)))))-))......... ( -15.00, z-score = -2.82, R) >droYak2.chrX 7860663 53 - 21770863 AUAAUCUGCGAUGGUAUCAUAGAACACAUGAUGCCUUAUCAGGGCCAUUAACC ....((((....((((((((.......))))))))....)))).......... ( -12.60, z-score = -1.53, R) >droEre2.scaffold_4690 5443680 51 + 18748788 AUAAUCUGUGGCCAAGUCAUAGCAC-CCAGUUGCCUUAUCG-GGCCAUAAACA ......(((((((........(((.-.....))).......-))))))).... ( -12.86, z-score = -1.33, R) >droSec1.super_20 217663 52 - 1148123 AUAAUCUGUGACCAAGUCAGAGAUCACCCGAUGCCUUAUCA-GGCCAUAAACC ...((((.((((...)))).))))........((((....)-)))........ ( -11.00, z-score = -2.16, R) >droSim1.chrX 10406326 52 - 17042790 AUAAUCUGUGGCCAAGUCAGAGAUCACCUGAUGCCUUAUCA-GGCCAUAAACC ......(((((((..((.((..(((....)))..)).))..-))))))).... ( -13.60, z-score = -1.95, R) >consensus AUAAUCUGUGGCCAAGUCAUAGAUCACCUGAUGCCUUAUCA_GGCCAUAAACC ....((((((((...)))))))).........(((.......)))........ ( -7.78 = -8.02 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:48 2011