| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,556,364 – 13,556,414 |
| Length | 50 |
| Max. P | 0.563980 |
| Location | 13,556,364 – 13,556,414 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 86.67 |
| Shannon entropy | 0.18366 |
| G+C content | 0.60000 |
| Mean single sequence MFE | -17.50 |
| Consensus MFE | -14.33 |
| Energy contribution | -15.00 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563980 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13556364 50 - 22422827 GUCACAUGCCCGGAUACGUGUCCUGUGACGCGACUAUGGCCGUGGCCGUG ((((((.((.((....)).))..)))))).....((((((....)))))) ( -17.60, z-score = -0.72, R) >droYak2.chrX 7839303 50 - 21770863 GUCACAUGUCCGGAAACGUGUCCCGUGACCCGAUUGUGGCUAUGACUGUG ((((((.(((.((..(((.....)))..)).))))))))).......... ( -14.00, z-score = -1.08, R) >droEre2.scaffold_4690 5421765 50 + 18748788 GUCACAUGUCCGGAAACGUGUCCCGUGACGCGACUGUGGCUGUGACUGUG ((((((.((((((...((((((....)))))).))).))))))))).... ( -20.90, z-score = -2.82, R) >consensus GUCACAUGUCCGGAAACGUGUCCCGUGACGCGACUGUGGCUGUGACUGUG ((((((.((((((...((((((....)))))).))).))))))))).... (-14.33 = -15.00 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:46 2011