| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,552,133 – 13,552,223 |
| Length | 90 |
| Max. P | 0.997174 |
| Location | 13,552,133 – 13,552,223 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.40 |
| Shannon entropy | 0.21330 |
| G+C content | 0.28554 |
| Mean single sequence MFE | -19.46 |
| Consensus MFE | -19.47 |
| Energy contribution | -19.37 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.72 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.05 |
| SVM RNA-class probability | 0.997174 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13552133 90 + 22422827 CUCUUAGCAAUUUAGGUGCUCAAUCUAACUAUAUAGUCAAAUAUGUAAAU-UUUUGAGUGCUAUAAAAUGCAAGGCCAAAAUU-AAAUCAAA---------------------------- .((((.(((.((((((..(((((......((((((......))))))...-..)))))..)).)))).)))))))........-........---------------------------- ( -19.10, z-score = -2.60, R) >droSec1.super_20 192134 90 + 1148123 CUCUUAGCAAUUUAGGUGCUCAAUCUAACUAUAUAGUCAAAUAUGUAAAU-UUUUGAGUGCUAUAAAAUGCAAGGCCAAAAUU-AAAUCAAA---------------------------- .((((.(((.((((((..(((((......((((((......))))))...-..)))))..)).)))).)))))))........-........---------------------------- ( -19.10, z-score = -2.60, R) >droYak2.chrX 7834978 90 + 21770863 CUCUUAGCAAUUUAGGUGCUCAAUCUAACUAUAUAGUCAAAUAUGUAAAU-UUUUGAGUGCUAUAAAAUGCAAGGCCAAAAUU-AAAUCCAA---------------------------- .((((.(((.((((((..(((((......((((((......))))))...-..)))))..)).)))).)))))))........-........---------------------------- ( -19.10, z-score = -2.54, R) >droEre2.scaffold_4690 5417601 90 - 18748788 CUCUUAGCAAUUUAGGUGCUCAAUCUAACUAUAUAGUCAAAUAUGUAAAU-UUUUGAGUGCUAUAAAAUGCAAGGCCAAAAUU-AAAUCCAA---------------------------- .((((.(((.((((((..(((((......((((((......))))))...-..)))))..)).)))).)))))))........-........---------------------------- ( -19.10, z-score = -2.54, R) >droSim1.chrX 10385853 90 + 17042790 CUCUUAGCAAUUUAGGUGCUCAAUCUAACUAUAUAGUCAAAUAUGUAAAU-UUUUGAGUGCUAUAAAAUGCAAGGCCAAAAUU-AAAUCAAA---------------------------- .((((.(((.((((((..(((((......((((((......))))))...-..)))))..)).)))).)))))))........-........---------------------------- ( -19.10, z-score = -2.60, R) >droAna3.scaffold_13334 470895 92 + 1562580 CUCUUAGCAAUUUAGGUGCUCAAUCUAACUAUAUAGUCAAAUAUGUAAACAUUUUGAGUGCCAUAAAAUGCAAGGCCAAAAUUUAAAGCAAA---------------------------- .((((.(((.((((((..(((((......((((((......))))))......)))))..)).)))).))))))).................---------------------------- ( -22.20, z-score = -3.19, R) >dp4.chrXL_group3b 96443 120 + 386183 CUCUUAGCAAUUUAGGUGCUCAAUCUAACUAUAUAGUCAAAUAUGUAUACAUUUUGAGUGCUAUAAAAUGCAAAACCAAACCAAAAAACAAACCAAAACCAAAGCCAAAUUUAAAUCAAA ......(((.((((((..(((((......((((((......))))))......)))))..)).)))).)))................................................. ( -18.50, z-score = -2.96, R) >consensus CUCUUAGCAAUUUAGGUGCUCAAUCUAACUAUAUAGUCAAAUAUGUAAAU_UUUUGAGUGCUAUAAAAUGCAAGGCCAAAAUU_AAAUCAAA____________________________ .((((.(((.((((((..(((((......((((((......))))))......)))))..)).)))).)))))))............................................. (-19.47 = -19.37 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:45 2011