| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,543,195 – 13,543,337 |
| Length | 142 |
| Max. P | 0.865642 |
| Location | 13,543,195 – 13,543,337 |
|---|---|
| Length | 142 |
| Sequences | 5 |
| Columns | 147 |
| Reading direction | reverse |
| Mean pairwise identity | 87.46 |
| Shannon entropy | 0.20938 |
| G+C content | 0.44535 |
| Mean single sequence MFE | -34.88 |
| Consensus MFE | -28.71 |
| Energy contribution | -29.23 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.865642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13543195 142 - 22422827 GGCCGAGUCAAAUGGAAGUGAAAACUCCUAUACGCGUACAACGAUCGCCUCAUUCCCAGUUC--UACAUAGCGCCUAUGGUACUGGCCUUUAUUGGAGCACAAAAGAAUUAAAAUCCCGAUAGAGGCGAACC---AAGAAAACAUUG (..((.((...((((.(((....))).)))))).))..).....(((((((....(((((..--..(((((...)))))..)))))....((((((....................)))))))))))))...---............ ( -34.15, z-score = -1.35, R) >droSim1.chrX 10376381 142 - 17042790 GGUCAAGCCAAGUGGAAGUGAAAACUCCUAUACGCGUACAACGAUCGCCUCAUUUCCAGUUC--CACAUAGCGCCUAUGGUACUGGGCUUUAUUGGAGCACAAAAGAAUUAAAAUCCAGAUAGAGGCGAACC---AAGAAAACAUUG (((...((...((((.(((....))).))))..)).........(((((((.......((((--((.((((.(((((......))))).))))))))))......((.......))......))))))))))---............ ( -38.00, z-score = -2.17, R) >droSec1.super_20 183485 142 - 1148123 GGUCAAGCCAAGUGGAAGUGAAAACUCCUAUACGCGUACAACGAUCGCCUCAUUUCCAGUUC--CACAUAGCGCCUAUGGUACUGGGCUUUAUUGGAGCACAAAAGAAUUAAAAUCCAGAUAGAGGCGAACC---AAGAAAACAUUG (((...((...((((.(((....))).))))..)).........(((((((.......((((--((.((((.(((((......))))).))))))))))......((.......))......))))))))))---............ ( -38.00, z-score = -2.17, R) >droYak2.chrX 7826141 134 - 21770863 ------GUCAGGUCAAAGUGAAAACUCCCAUAC-------ACGAUCGCCUCAUUCCCAGUUCCCCACAUAGCGCCUAUGGUACUGGGCUUUAUUGGAGCACAAAAGAAUUAAAAUCCAGAUAGAGGCGAACCAAGAAGAAAACAUUG ------....(((...(((....))).......-------....(((((((...((((((......(((((...)))))..)))))).....(((((.................)))))...))))))))))............... ( -32.33, z-score = -1.81, R) >droEre2.scaffold_4690 5408983 127 + 18748788 ------GCCAGGUCAAAGUGGAAACUCCUAUA---------CGAUCGCCUCAUUCGCAGUUC--CACAUAGCGCCUAUGGUACUGCACUUUAUUGGAGCACAAAAGAAUUAAAAUCCAGAUAGAGGCGAACC---AAGAAAUCAUUG ------....(((...(((....)))......---------...(((((((....(((((..--..(((((...)))))..)))))......(((((.................)))))...))))))))))---............ ( -31.93, z-score = -2.03, R) >consensus GG_C_AGCCAAGUGGAAGUGAAAACUCCUAUACGCGUACAACGAUCGCCUCAUUCCCAGUUC__CACAUAGCGCCUAUGGUACUGGGCUUUAUUGGAGCACAAAAGAAUUAAAAUCCAGAUAGAGGCGAACC___AAGAAAACAUUG ...........((((.(((....))).)))).............(((((((....(((((......(((((...)))))..)))))......(((((.................)))))...))))))).................. (-28.71 = -29.23 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:43 2011