| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,541,777 – 13,541,870 |
| Length | 93 |
| Max. P | 0.686446 |
| Location | 13,541,777 – 13,541,870 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 63.35 |
| Shannon entropy | 0.58970 |
| G+C content | 0.40374 |
| Mean single sequence MFE | -15.41 |
| Consensus MFE | -8.50 |
| Energy contribution | -9.30 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.32 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.686446 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13541777 93 - 22422827 --------UAGCAGCAACGAAAGCAAACAAACUUUGAUCUUCAAUUACGAAUAUCCC--UCGGUGACGUGCGUUGCGCUCCCA-AAAAAAACAAAUUCGGAAAA----------------- --------.(((.((((((...((...........(((.(((......))).)))..--..(....))).)))))))))....-....................----------------- ( -17.40, z-score = -0.86, R) >droSec1.super_20 182161 101 - 1148123 --------UAGCAGCAACGAAAGCAAACAAACUUUGAUCUUCAAUUACGAAUAUCCC--UCGGUGACGUGCGUUGCGCUCCCA-GAAAACACAACAAAAAAAUUUCGGAAAG--------- --------.(((.((((((...((...........(((.(((......))).)))..--..(....))).))))))))).((.-((((..............))))))....--------- ( -18.34, z-score = -0.83, R) >droYak2.chrX 7824855 110 - 21770863 --------UAGCAGCCACGAAAACAAACAAACUUUGAUCUUCAAUUACGAAUAUCCC--UCGGUGACGUGCGUUGCGCUCUCA-CAGAAAACAACCACCACAAAAUAAUAGAAGAAGAAAC --------..(((((((((....((((.....))))....(((....(((.......--))).))))))).))))).......-..................................... ( -16.10, z-score = -0.75, R) >droEre2.scaffold_4690 5407750 81 + 18748788 --------UAGCAGCAAUGAAAACAAGCAAACGUUGAUCUUCAAUUACGAAUAUUCU--CUGGUGAACUGCGUUGCGCUCCCAGCAAAAAA------------------------------ --------..(((((..((((....(((....)))....)))).((((.(.......--.).)))).....)))))((.....))......------------------------------ ( -12.80, z-score = 0.65, R) >droAna3.scaffold_13334 458435 90 - 1562580 UAGCAAAGCCCCAGCCAAGAAAGCAAACAAACUUUGAUCUUCAAUUACGAAGAUCCCAUCCAGUGACGUCUACAUUACUAUAUCUUAAAU------------------------------- ................((((...............(((((((......)))))))......(((((.(....).)))))...))))....------------------------------- ( -12.40, z-score = -2.24, R) >consensus ________UAGCAGCAACGAAAGCAAACAAACUUUGAUCUUCAAUUACGAAUAUCCC__UCGGUGACGUGCGUUGCGCUCCCA_CAAAAAACAA_______A___________________ .........(((.((((((...((..((.......(((.(((......))).))).......))...)).))))))))).......................................... ( -8.50 = -9.30 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:42 2011