| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,540,800 – 13,540,905 |
| Length | 105 |
| Max. P | 0.827219 |
| Location | 13,540,800 – 13,540,905 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 75.72 |
| Shannon entropy | 0.37645 |
| G+C content | 0.50742 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -12.74 |
| Energy contribution | -12.92 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13540800 105 - 22422827 CCCUAACACCCCCCCUCCCGGUACGCUAUUGUACAUCCUUCACUACGGUGAAAGAUGAGCCCCUACCGGUCAAGUGGAUCGAAAACCAUGUCAUAGCGGAAAUGA (((((............((((((.(((......((((.(((((....))))).)))))))...))))))....((((........))))....))).))...... ( -27.50, z-score = -1.76, R) >droSim1.chrX 10374148 89 - 17042790 ----------------CCCACUCCCCACUUGUACAUCCUUCGCUACUGUGAAAGAUGAGCUCCUGCCGGUCAAGUGGUUCGAAAACCAUGUCAUAGCGGAAAUGA ----------------.....((((((((((..((((.(((((....))))).)))).((....))....)))))))...((........)).....)))..... ( -21.90, z-score = -1.17, R) >droSec1.super_20 181254 92 - 1148123 -------------CCUCACUGGUCUCCAUUGUACAUCCUUCGCUACUGUGAAAGAUGAGCCCCUGCCGGUCAAGUGGUUCGAAAACCAUGUCAUAGCGGAAAUUA -------------((.(((((((.......((.((((.(((((....))))).)))).))....))))))...((((((....))))))......).))...... ( -22.80, z-score = -0.94, R) >droEre2.scaffold_4690 5406904 90 + 18748788 ---------------CCCACCGCCCCCAUAGUACUUUCUCCACUACUAUGAAAGAUGAGCCCCUCCUUGCCGAGUGGCUCGAAAACUAUGUCAUAGCGGAAAUGA ---------------....((((...((((((.(((((...........))))).((((((.(((......))).))))))...)))))).....))))...... ( -28.10, z-score = -5.12, R) >consensus _______________UCCCACGCCCCCAUUGUACAUCCUUCACUACUGUGAAAGAUGAGCCCCUGCCGGUCAAGUGGUUCGAAAACCAUGUCAUAGCGGAAAUGA ..............................((.((((.(((((....))))).)))).)).....(((.....((((........)))).......)))...... (-12.74 = -12.92 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:42 2011