| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,535,366 – 13,535,477 |
| Length | 111 |
| Max. P | 0.828370 |
| Location | 13,535,366 – 13,535,477 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.26 |
| Shannon entropy | 0.21943 |
| G+C content | 0.49095 |
| Mean single sequence MFE | -37.55 |
| Consensus MFE | -30.52 |
| Energy contribution | -31.13 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828370 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13535366 111 - 22422827 --------UUUCAUGUUUGGCU-UGAUGCGUGGCUGUUAAUUAACACUAGACAGCACACGUUCGCUUUGCGGUCACUUGCAGACAGUCAGGGCCACUCUACAGAACGGAGUGCCAACAUA --------....(((((.(((.-.((.(((((((((((...........)))))).)))))))(((((((.(((.......))).).)))))).(((((.......))))))))))))). ( -35.50, z-score = -1.65, R) >droSim1.chrX 10368760 112 - 17042790 --------UUUCAUGUUUGGCUGCUAUGCGUGGCUGUUAAUUAACACUAGACAGCACACGUUCGCUUUGCGGUCACUUGCAGACAGUCAGGGCCACUCUACAGAACGGAGUGCCAACAUA --------....(((((((((((...((((((((((((...........)))))).)))(..(((...)))..)....)))..)))))).(((.(((((.......))))))))))))). ( -36.90, z-score = -1.81, R) >droSec1.super_20 175908 112 - 1148123 --------UUAAAUGUUUGGCUGCUAUGCGUGGCUGUUAAUUAACACUAGACAGCACACGUUCGCUUUGCGGUCACUUGCAGACAGUCAGGGCCACUCUACAGAAUGGAGUGCCAACAUA --------....(((((((((((...((((((((((((...........)))))).)))(..(((...)))..)....)))..)))))).(((.((((((.....)))))))))))))). ( -38.00, z-score = -2.16, R) >droYak2.chrX 7818432 112 - 21770863 --------UUUCAUGUUUGGCUGCGAUGCGUGGCUGUUAAUUAACACUAGACAGCACACGUUCGCUUUGCGGUCACUGGCAGACAGUCAGGGCCACUCUACAGAACGGAGUACCAACAUA --------....(((((.(((.((((.(((((((((((...........)))))).)))))))))...))((((.(((((.....)))))))))(((((.......))))).).))))). ( -41.60, z-score = -3.46, R) >droEre2.scaffold_4690 5401391 112 + 18748788 --------UUUCAUGUUUGACUGCGAUGCAUGGCUGUUAAUUAACACUAGACAGCACACGUUCGCUUUGCGGUCACUUGCAGACAGUCAGGGCCACUCUAAAGAACGGAGUGCCAACAUA --------....((((((((((((((.((.((((((((...........)))))).)).))))))(((((((....))))))).))))).(((.(((((.......))))))))))))). ( -35.50, z-score = -2.11, R) >droAna3.scaffold_13334 451568 115 - 1562580 UUGUGUGUGUGCGGCUCUAGUGCCAGUGCGUGGCUGUCAAUUAACACUAGACAGCACACGUUCGCUUUGCGGUCAAUUGCAGACAGUCAGGGCCAGUCUACAGAAUGGAAUGCCA----- (((..(((.((((((......)))...(((((((((((...........)))))).)))))((((...))))......))).)))..)))(((...((((.....))))..))).----- ( -37.80, z-score = 0.21, R) >consensus ________UUUCAUGUUUGGCUGCGAUGCGUGGCUGUUAAUUAACACUAGACAGCACACGUUCGCUUUGCGGUCACUUGCAGACAGUCAGGGCCACUCUACAGAACGGAGUGCCAACAUA ................(((((((...((((((((((((...........)))))).)))(..(((...)))..)....)))..)))))))(((.(((((.......))))))))...... (-30.52 = -31.13 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:41 2011