| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,531,443 – 13,531,544 |
| Length | 101 |
| Max. P | 0.507210 |
| Location | 13,531,443 – 13,531,544 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 54.24 |
| Shannon entropy | 0.72631 |
| G+C content | 0.34614 |
| Mean single sequence MFE | -18.38 |
| Consensus MFE | -6.15 |
| Energy contribution | -6.15 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.507210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13531443 101 - 22422827 UGCAUAAUCAAAGGUUUAAACUAUUGAUAACAGUACAAUUUGAGUUGAUUACUUCAGUUCAAUGGCAAAAACAACA---AAGCAUAUUUAGAUCGCAGACAUAC---------- (((...(((((.(((....))).)))))....((.....((((..(((.....)))..))))..))..........---...............))).......---------- ( -14.10, z-score = -0.33, R) >droYak2.chrX 7814605 102 - 21770863 CGCAUAAUUAAAGGUUUCAAUUAUUGAUAACAGUACAAUUUGGGCUGAUUACUUCGGUUCAAUGGCAAAAACUAGACACACUUGUAUUUAGAUCGCAGACAU------------ .((((((((.........)))))).(((...(((((((.(((((((((.....)))))))))(((......))).......)))))))...)))))......------------ ( -17.50, z-score = -0.90, R) >droEre2.scaffold_4690 5397528 90 + 18748788 UGCAUAAUUAAAGGUUUAUAUUAUUGAUAGCAGACCAAUUUGAGCUGAUAACUUCAGUUCAAUGGCAAAA------------CGUAUUUAGAUCGCAGACAU------------ (((.........(((((.((((...))))..)))))...(((((((((.....)))))))))........------------............))).....------------ ( -18.80, z-score = -1.97, R) >droWil1.scaffold_181096 882535 114 + 12416693 AGAGCCAGCAUAUGAUUAGCACUCGAAUUGCGCGCCGGCGCAAAGGAAAAACAAAACGACAAUAACAAAAAUCUAGCUAACCAAAAGCUACAUAUAAACUGGAUCAGGAUCUUG .((.((((.(((((........(((..((((((....)))))).(......)....)))..............(((((.......))))))))))...)))).))......... ( -23.10, z-score = -1.59, R) >consensus UGCAUAAUCAAAGGUUUAAAUUAUUGAUAACAGUACAAUUUGAGCUGAUAACUUCAGUUCAAUGGCAAAAAC_A_A___AC_CAUAUUUAGAUCGCAGACAU____________ ............((((((((...........((......))(((((((.....)))))))..........................)))))))).................... ( -6.15 = -6.15 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:39 2011