| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,514,678 – 13,514,773 |
| Length | 95 |
| Max. P | 0.554096 |
| Location | 13,514,678 – 13,514,773 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 67.14 |
| Shannon entropy | 0.62619 |
| G+C content | 0.53215 |
| Mean single sequence MFE | -29.39 |
| Consensus MFE | -11.07 |
| Energy contribution | -10.80 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.88 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554096 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13514678 95 + 22422827 ------CUGCG-CUUCCAAGUUCUGUUUCUUGCGCAAAUCCCUGCGCGUACGCUUGCGGAUCAUCUUCAGCCGGCGAUGGAUUACAUCGUCAUCGCCGGGAA ------....(-.((((((((...((....((((((......)))))).))))))).))).)........((((((((((.........))))))))))... ( -31.10, z-score = -0.93, R) >droEre2.scaffold_4690 5381051 95 - 18748788 ------CUGCG-CUUCCUCGCUCUGCUUCUUGCGCGAAUCCCUUCGCAUCUGCUUGCGAAUCUUCUUGAGCCGGCGAUGGGUCACCUCGUCAUCGCCUGGAA ------.....-..(((..((((.((.....))..(((....((((((......))))))..)))..)))).(((((((((......).)))))))).))). ( -29.30, z-score = -0.97, R) >droSec1.super_20 146434 95 + 1148123 ------CUGCG-CUUCCAAGCUCUGUUUCUGGCGCAAAUCCCUGCGCGUUUGCUUGCGGAUCACCUUGAGUCGGCGAUGGAUCACAUUGUCAUCGCCGGGAA ------.((((-((...((((...))))..))))))..((((..((((......))))..............((((((((.........)))))))))))). ( -32.10, z-score = -0.61, R) >droWil1.scaffold_181096 11603264 102 + 12416693 CGGCGGCAGCGGCAUCUUCGCUCUGCUUCUUGCGCGUAUCGCGUCGCAUUUGUUUCCUGAUCUUCUUGAGACGACGGUGGGUCACCUCAUCGUCGCCAGGUA .((((((((.(((......))))))))...((((((.....)).))))...(((((..(.....)..)))))(((((((((....))))))))))))..... ( -38.20, z-score = -1.57, R) >droVir3.scaffold_12970 5422584 95 + 11907090 ------CUGGG-CCUCCUCGUUCUGCUUUUUGCGUGUAUCACGACGCAUUUGCUUGCGUAUCUUUUUGAGACGGCGAUGGGUAACCUCAUCAUCACCUGGCA ------..(((-((..((((............((((...))))(((((......))))).......))))..)))((((((....))))))....))..... ( -25.90, z-score = -0.69, R) >droMoj3.scaffold_6519 1136 95 + 2080 ------CUGGG-CUUCCUCGUUCUGCUUUUUACGUGUAUCACGACGCAUUUGUUUGCGUAUCUUCUUGAGUCGGCGAUGGGUUAUCUCAUCGUCGCCAGGCA ------((((.-....((((............((((...))))(((((......))))).......)))).((((((((((....))))))))))))))... ( -31.60, z-score = -2.91, R) >triCas2.ChLG9 11518575 95 + 15222296 -------UUCUUCUUUUUGUCCCUCCUUCUGUCGCUUCUUUCGGGCAAGAAGCUUCCGAAUGUUCCUCAAUCUUUUGUACAUAACUGUAUUUGAUUCAGGUA -------.....((((((((((....................))))))))))............(((.((((....(((((....)))))..)))).))).. ( -17.55, z-score = -1.64, R) >consensus ______CUGCG_CUUCCUCGCUCUGCUUCUUGCGCGUAUCCCGGCGCAUUUGCUUGCGGAUCUUCUUGAGUCGGCGAUGGGUCACCUCAUCAUCGCCAGGAA ...................((...((....((((((......))))))...))..)).......((((.(.(((.((((((....)))))).)))))))).. (-11.07 = -10.80 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:38 2011