| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,511,782 – 13,511,834 |
| Length | 52 |
| Max. P | 0.750457 |
| Location | 13,511,782 – 13,511,834 |
|---|---|
| Length | 52 |
| Sequences | 4 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 86.73 |
| Shannon entropy | 0.21008 |
| G+C content | 0.34811 |
| Mean single sequence MFE | -6.22 |
| Consensus MFE | -7.01 |
| Energy contribution | -6.70 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.27 |
| Mean z-score | 0.03 |
| Structure conservation index | 1.13 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.750457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13511782 52 + 22422827 AAGCCAUCUUACCCAUGAGUGCGGGAUCAACUUGAGUAAAUAUUUAUGUAUU .............((((((((.....((.....)).....)))))))).... ( -5.20, z-score = 0.99, R) >droYak2.chrX 7794853 51 + 21770863 AAACCAUGUUACCUAUAAGUAUAG-AUCAACUUGAGCACAUAUUUAUGUAUU .............(((((((((..-.((.....))....))))))))).... ( -4.50, z-score = -0.00, R) >droSec1.super_20 143534 51 + 1148123 CAGCCACGUUACCCAUAAGUGUGG-AUCAACUUGAGCAAAUAUUUAUGUAUU ..((((.(((..((((....))))-...))).)).))............... ( -7.60, z-score = -0.43, R) >droSim1.chrX_random 3660179 50 + 5698898 CAGCCACGUUACCCAUAAGUGUGG-AUCAACUUGAGCAAAUAUUUAUGUAU- ..((((.(((..((((....))))-...))).)).))..............- ( -7.60, z-score = -0.43, R) >consensus AAGCCACGUUACCCAUAAGUGUGG_AUCAACUUGAGCAAAUAUUUAUGUAUU .............(((((((((....((.....))....))))))))).... ( -7.01 = -6.70 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:37 2011