| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,485,151 – 13,485,245 |
| Length | 94 |
| Max. P | 0.659436 |
| Location | 13,485,151 – 13,485,245 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 70.08 |
| Shannon entropy | 0.51825 |
| G+C content | 0.34787 |
| Mean single sequence MFE | -16.05 |
| Consensus MFE | -6.08 |
| Energy contribution | -5.83 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.659436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13485151 94 + 22422827 UGAAGAAAAAAACGAGAAGUUUUUGC--AAUGAAGAA----GAUGCAGGAAAUCCAUUGCAUA----CUCUCACCGACCUCGUUUACAAUAUGAAAAAAAAAAU----- .........(((((((..((....))--..(((.((.----.(((((((....))..))))).----.))))).....)))))))...................----- ( -16.90, z-score = -2.21, R) >droSec1.super_20 117429 89 + 1148123 UGAAGAAAAAA-CGAGGAGUUUUUGC--AAUGAAGAA----GAUGCAGGAAAUCCAUUGCAUA----CUCUCACCGACCUCUUUUACAAUAUGAAAAGAU--------- ...........-((..(((....(((--((((.....----(((.......))))))))))..----..)))..))...((((((........)))))).--------- ( -17.00, z-score = -1.54, R) >droSim1.chrX 10342951 89 + 17042790 UGAAGAAAAAA-CGAGGAGUUUUUGC--AAUGAAGAA----GAUGCAGGAAAUCCAUUGCAUA----CUCUCACCGACCUCGUUUACAAUAUGAAAAGAU--------- ........(((-(((((.((....))--..(((.((.----.(((((((....))..))))).----.)))))....))))))))...............--------- ( -20.40, z-score = -2.65, R) >droYak2.chrX 7767947 88 + 21770863 UGAAGAAAAAA-CGAGGAGUUUUUGC--AAUAAUAAA----GAUGCAGGAAAUCCAUUGCAUG----CUCACACCGACCUCGUUUACAAGAAAAAUAAA---------- ........(((-(((((.((....))--.........----.(((((((....))..))))).----..........))))))))..............---------- ( -17.10, z-score = -2.12, R) >droEre2.scaffold_4690 5351435 82 - 18748788 UGAAGAAAGAA-CGAGAAAUUUUUGC--AAUGAUGAA----AAUGCAGGAAAUCCACUGCAUA----CUCUUACCGACCUCGUUUAUAAUAAA---------------- ........(((-((((....((((..--......)))----)((((((........)))))).----...........)))))))........---------------- ( -15.40, z-score = -2.67, R) >droGri2.scaffold_15203 2945338 108 + 11997470 -AAAAAGAAAAUGAAACAACUUUAACCAAAUAAAACAACUCGUUGCAGGAUGCUCACUGCACAGCUCCUCUUAAAUACUAUACCCACACUAUUGUUAUAACGACUAAAU -......................................((((((.((((.(((........)))))))................(((....)))..))))))...... ( -9.50, z-score = -0.36, R) >consensus UGAAGAAAAAA_CGAGGAGUUUUUGC__AAUGAAGAA____GAUGCAGGAAAUCCAUUGCAUA____CUCUCACCGACCUCGUUUACAAUAUGAAAAAA__________ .............(((...((((((.....))))))......((((((........))))))................)))............................ ( -6.08 = -5.83 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:36 2011