| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,477,058 – 13,477,158 |
| Length | 100 |
| Max. P | 0.573577 |
| Location | 13,477,058 – 13,477,158 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 76.59 |
| Shannon entropy | 0.42916 |
| G+C content | 0.28872 |
| Mean single sequence MFE | -17.67 |
| Consensus MFE | -8.80 |
| Energy contribution | -9.25 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573577 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13477058 100 - 22422827 CUCCUAAAUGU-CAAAGAUACAAAUCAAAUAUUUGAUUUCAUUUGUGUGA-----CCGCACAAUUUUGAGAGCAAUUAAAUCAAAG-UUAAUUGCCUUUUUUAAUUG---- .........((-((.((((..(((((((....))))))).))))...)))-----)....(((((..((((((((((((.......-))))))).)))))..)))))---- ( -18.80, z-score = -2.14, R) >droSim1.chrX_random 3646065 100 - 5698898 CUCCUUAAUGU-CAAAGAUACAAAUCAAAUAUUUGAUUUAAUUUGUGUGA-----CCGCACAAUUUUGAGAGCAAUUAAAUCAAAG-UUAAUUGCCUUUUUUAAUUG---- ........(.(-(((((....(((((((....)))))))...((((((..-----..)))))))))))).)((((((((.......-))))))))............---- ( -19.10, z-score = -2.37, R) >droSec1.super_20 109504 100 - 1148123 CUCCUUAAUGU-CAAAGAUACAAAUCAAAUAUUUGAUUUAAUUUGUGUGA-----CCGCACAAUUUUGAGAGCAAUUAAAUCAAAG-UUAAUUGCCUUUUUUAAUUG---- ........(.(-(((((....(((((((....)))))))...((((((..-----..)))))))))))).)((((((((.......-))))))))............---- ( -19.10, z-score = -2.37, R) >droYak2.chrX 7759544 100 - 21770863 CUCCUUGAUGU-CAAAGAUACAAAUCAAAUAUUUGAUUUAAUUUGUGUGA-----CCGCACAUUUUUGAGAGCAAUUAUAUCAAAG-UUAAUUGCCUUUUUUAAUUA---- ........(.(-(((((((..(((((((....))))))).....((((..-----..)))))))))))).)(((((((........-.)))))))............---- ( -19.20, z-score = -2.15, R) >droEre2.scaffold_4690 5342957 100 + 18748788 CUCCUUAAUUU-CAAAGAUCACAAUCAAAUAUUUCAUUUCAUCUGUAUGA-----CCGCACAUUUUUGGGAGCAAUUAAAUCAAAC-UUAAUUGCCCUUUUUAAUUG---- ...........-(((((((.....(((.(((............))).)))-----......)))))))((.((((((((.......-))))))))))..........---- ( -11.80, z-score = -0.66, R) >droWil1.scaffold_181150 2585952 111 - 4952429 UUUUGCACUGUAUAAAAAUACAAGUUUCGAAGUUUAGAGAGUUUUCGAAAAUGUUCCCAAAAGGUGUGUCAGCUAUCAGAUCGAAGUUUUACCAAGUUCUUUAGUGUAUCC ...(((((((.........(((..((((((((..........)))))))).)))........((((....((((.((.....)))))).))))........)))))))... ( -18.00, z-score = -0.53, R) >consensus CUCCUUAAUGU_CAAAGAUACAAAUCAAAUAUUUGAUUUAAUUUGUGUGA_____CCGCACAAUUUUGAGAGCAAUUAAAUCAAAG_UUAAUUGCCUUUUUUAAUUG____ ...(((((........(((....))).................((((((.......))))))...))))).((((((((........))))))))................ ( -8.80 = -9.25 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:34 2011