| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,469,055 – 13,469,174 |
| Length | 119 |
| Max. P | 0.599422 |
| Location | 13,469,055 – 13,469,174 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.09 |
| Shannon entropy | 0.45660 |
| G+C content | 0.52501 |
| Mean single sequence MFE | -28.43 |
| Consensus MFE | -15.40 |
| Energy contribution | -16.52 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.599422 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13469055 119 + 22422827 UUUCCACUCGCUCUCAAUCCUCUCUUGCCAGCCCGUUUCUCCUUCGAACGGGCAGAAAA-CCCAGUGACGAAUGUCGCCUGAAACUCAUAUGCACUCCAGCUCCUCCUUAAGGGCGAAUA .......(((((((................((((((((.......))))))))......-..(((((((....)))).)))..........((......)).........)))))))... ( -28.60, z-score = -1.51, R) >droSec1.super_20 101626 120 + 1148123 UUUCCACCCUCUCUCAAUCCUCUCCAGCCAGCCCGUUUCUCUUCCGAACGGGCGGAAAAACCCAGUGACGAAUGUCGCCUGAAACUCAUAUGCACUCCAGCUCCUCCUUAAGGGCGAAUA ....(.((((....................((((((((.......))))))))(((......(((((((....)))).)))..........((......)))))......)))).).... ( -28.20, z-score = -1.21, R) >droYak2.chrX 7750806 114 + 21770863 UCUCCAUCUACUC--AAUCGUCUGAUGGCAACCCGUUUUUCCUCCAAACGGACGGAAAG-CCCAGUGACGAAUGUCGCCUGAAACUCAUAUGCACUCCAGCUCCU---UGAGGGCGAAUA ............(--(.(((((...(((......(((((((.(((....))).))))))-))))..))))).))(((((.....((((...((......))....---)))))))))... ( -30.60, z-score = -1.54, R) >droEre2.scaffold_4690 5335014 114 - 18748788 UCUCAACCCGUUC--AAUCCCCUCUUGCCAACCCGAUUUUCCUGCCAACGGGCGGAAAA-CCCAGUGACGAAUGUCGCCUGAAACUCAUAUGCACUCCAGCUCCU---UAAGGGCGAAUA .........((((--..........(((........((((((.(((....)))))))))-..(((((((....)))).)))..........))).....((((..---...)))))))). ( -24.40, z-score = -0.37, R) >droSim1.chrX 10327754 120 + 17042790 UUUCCACCCGCUCUCAAUCCUCUCCAGCCUGCCCGUUUCUCCUCCGAACGGGCGGAAAAACCCAGUGACGAAUGUCGCCUGAAACUCAUAUGCACUCCAGCUCCUCCUUAAGGGCGAAUA ........((((((..........(((.((((((((((.......)))))))))).........(((((....))))))))..........((......)).........)))))).... ( -31.50, z-score = -2.11, R) >droAna3.scaffold_13248 2447356 94 + 4840945 ----------------UCCGGCCCUCUGGCACUAUUGUUUCCUCCGGA-GAAUGGUAGAACCUCUUGACAAAUGUCGCCUGAAACUCAUAUGCACUCCUGC---------AGGGCAACUA ----------------....((((((.(((.((((..((..(....).-.))..))))........(((....)))))).))........((((....)))---------)))))..... ( -27.30, z-score = -1.75, R) >consensus UUUCCACCCGCUC__AAUCCUCUCUUGCCAACCCGUUUCUCCUCCGAACGGGCGGAAAA_CCCAGUGACGAAUGUCGCCUGAAACUCAUAUGCACUCCAGCUCCU___UAAGGGCGAAUA ..............................((((((((.......)))))))).....................((((((...........((......))..........))))))... (-15.40 = -16.52 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:32 2011