| Sequence ID | dm3.chrX |
|---|---|
| Location | 13,465,875 – 13,465,948 |
| Length | 73 |
| Max. P | 0.789502 |
| Location | 13,465,875 – 13,465,948 |
|---|---|
| Length | 73 |
| Sequences | 6 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 60.88 |
| Shannon entropy | 0.73203 |
| G+C content | 0.48246 |
| Mean single sequence MFE | -22.22 |
| Consensus MFE | -6.03 |
| Energy contribution | -7.17 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.789502 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 13465875 73 - 22422827 CGUUCUUUUGAGUUGUCUAACUUGGCUAUAAUCCCGUCAGUGUUGGCCAACGUUGGCCAAAGAAGGCCAAAUA-------- ...........((((.((((((((((.........))))).))))).)))).((((((......))))))...-------- ( -22.50, z-score = -2.66, R) >droSim1.chrX 10324672 69 - 17042790 CGUUCUUCUGAGUUGUCUAACUUGGCUAUAAUCCCGUCAGUGUUGGCCAACGUU----AAAGAAGGCCAAACA-------- .(..(((((..((((.((((((((((.........))))).))))).))))...----..)))))..).....-------- ( -19.80, z-score = -2.66, R) >droSec1.super_20 98485 69 - 1148123 CGUUCUUCUGAGUUGUCUAACUUGGCUAUAAUCUCGUCAGUGUUGGCCAACGUU----AAAGAAGGCCAAACA-------- .(..(((((..((((.((((((((((.........))))).))))).))))...----..)))))..).....-------- ( -19.80, z-score = -2.79, R) >droYak2.chrX 7747121 81 - 21770863 CAAAGUUCUGAGCUGUCCAACUUGGCUAUAAUCCCGUCAGUUCUGGCCGACUUUAAAGGUCGAAAACGAGAAGUUGGGCAA .............(((((((((((((((.(((.......))).)))))((((.....)))).........)))))))))). ( -24.10, z-score = -1.83, R) >droEre2.scaffold_4690 5331913 79 + 18748788 CGAAGUUCUGAGUUGUCUAACUUGGCUAUUAUCCCGUCAGUUCUGGCCAACUUUAAAAGUC--CAACUGGAAGACGGCGAA ...........(((((((...(((((((..((.......))..))))))).........((--(....))))))))))... ( -18.30, z-score = -0.40, R) >droMoj3.scaffold_6473 6522805 71 + 16943266 -GACUCCGAGUGCUAUCUGGUGUGGCCA-GGCCACUGGGGAGUCGCCCAUCGAUACGCAGUGGAGCGCAGAGA-------- -..(((...(((((.(((((.....)))-))((((((.(..((((.....)))).).))))))))))).))).-------- ( -28.80, z-score = -0.98, R) >consensus CGAUCUUCUGAGUUGUCUAACUUGGCUAUAAUCCCGUCAGUGUUGGCCAACGUUA___AAAGAAGGCCAAAAA________ ...........((((.((((((((((.........))))).))))).)))).............................. ( -6.03 = -7.17 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:40:31 2011